RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 COL15A1P39059 1388 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 DHX16O60231 1041 aaKnown RBP12.55□□□□□ -0.4
CCDC40-207ENST00000572253 ATP5J2-PTCD1G3V325 749 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 PTCD1O75127 700 aaKnown RBP12.55□□□□□ -0.4
CCDC40-207ENST00000572253 ADD1P35611 737 aaKnown RBP12.55□□□□□ -0.4
CCDC40-207ENST00000572253 GUCY1B3Q02153 619 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 LMBR1LQ6UX01 489 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 STOX1Q6ZVD7 989 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 ZNF496Q96IT1 587 aaPredicted RBP12.55□□□□□ -0.4
CCDC40-207ENST00000572253 GOLPH3LQ9H4A5 285 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 USP16Q9Y5T5 823 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 PHRF1Q9P1Y6 1649 aaKnown RBP12.55□□□□□ -0.4
CCDC40-207ENST00000572253 IFNL2Q8IZJ0 200 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 CTNNA3Q9UI47 895 aa12.55□□□□□ -0.4
CCDC40-207ENST00000572253 FBXW7Q969H0 707 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 IMPACTQ9P2X3 320 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 PALLDQ8WX93 1383 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 FTOQ9C0B1 505 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC40-207ENST00000572253 E7EWF7 191 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 CSB-PGBD3P0DP91 1061 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 EXOSC10Q01780 885 aaKnown RBP12.54□□□□□ -0.4
CCDC40-207ENST00000572253 ZMYM1Q5SVZ6 1142 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 CCDC150Q8NCX0 1101 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 ZNF397Q8NF99 534 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-207ENST00000572253 KCNG4Q8TDN1 519 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 NCOA5Q9HCD5 579 aaKnown RBP12.54□□□□□ -0.4
CCDC40-207ENST00000572253 GPR108Q9NPR9 543 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 TRMT1Q9NXH9 659 aaKnown RBP12.54□□□□□ -0.4
CCDC40-207ENST00000572253 PODXL2Q9NZ53 605 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 LMTK3Q96Q04 1460 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 SMC2O95347 1197 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 IFIT1P09914 478 aaKnown RBP12.54□□□□□ -0.4
CCDC40-207ENST00000572253 SNW1Q13573 536 aaKnown RBP12.54□□□□□ -0.4
CCDC40-207ENST00000572253 ADALQ6DHV7 355 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 PLBD2Q8NHP8 589 aa12.54□□□□□ -0.4
CCDC40-207ENST00000572253 A0A1W2PQ27 194 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 A0A1W2PQ64 194 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 A0A1W2PQD8 194 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 RNF113AO15541 343 aaKnown RBP12.53□□□□□ -0.4
CCDC40-207ENST00000572253 CTDNEP1O95476 244 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 PHKG2P15735 406 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 PDIA3P30101 505 aaKnown RBP12.53□□□□□ -0.4
CCDC40-207ENST00000572253 IL15P40933 162 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-207ENST00000572253 SYNE3Q6ZMZ3 975 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 DHX40Q8IX18 779 aaKnown RBP12.53□□□□□ -0.4
CCDC40-207ENST00000572253 ENGASEQ8NFI3 743 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 ERO1AQ96HE7 468 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 C8orf76Q96K31 380 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 RTEL1Q9NZ71 1219 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 ZNF771Q7L3S4 317 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-207ENST00000572253 AGXT2Q9BYV1 514 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 CPLX1O14810 134 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 GABPB1Q06547 395 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-207ENST00000572253 KRT28Q7Z3Y7 464 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 CCAR2Q8N163 923 aaKnown RBP12.53□□□□□ -0.4
CCDC40-207ENST00000572253 ORAI2Q96SN7 254 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 AXIN2Q9Y2T1 843 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 ERBB3P21860 1342 aa12.53□□□□□ -0.4
CCDC40-207ENST00000572253 HSPD1P10809 573 aaKnown RBP12.52□□□□□ -0.4
CCDC40-207ENST00000572253 ZC3H6P61129 1189 aaKnown RBP12.52□□□□□ -0.4
CCDC40-207ENST00000572253 ARID5BQ14865 1188 aa12.52□□□□□ -0.4
CCDC40-207ENST00000572253 GORABQ5T7V8 394 aa12.52□□□□□ -0.4
CCDC40-207ENST00000572253 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.52□□□□□ -0.4
CCDC40-207ENST00000572253 PCDHA7Q9UN72 937 aa12.52□□□□□ -0.4
CCDC40-207ENST00000572253 CARMIL3Q8ND23 1372 aa12.52□□□□□ -0.4
CCDC40-207ENST00000572253 CHGBP05060 677 aa12.52□□□□□ -0.41
CCDC40-207ENST00000572253 NYAP1Q6ZVC0 841 aa12.52□□□□□ -0.41
CCDC40-207ENST00000572253 SLU7O95391 586 aaKnown RBP12.52□□□□□ -0.41
CCDC40-207ENST00000572253 YEATS4O95619 227 aa12.52□□□□□ -0.41
CCDC40-207ENST00000572253 SFPQP23246 707 aaKnown RBP eCLIP12.52□□□□□ -0.41
CCDC40-207ENST00000572253 PIP4K2AP48426 406 aaPredicted RBP12.52□□□□□ -0.41
CCDC40-207ENST00000572253 IMMTQ16891 758 aaKnown RBP12.52□□□□□ -0.41
CCDC40-207ENST00000572253 DCAF5Q96JK2 942 aa12.52□□□□□ -0.41
CCDC40-207ENST00000572253 DDX41Q9UJV9 622 aaKnown RBP12.52□□□□□ -0.41
CCDC40-207ENST00000572253 SLIT3O75094 1523 aa12.52□□□□□ -0.41
CCDC40-207ENST00000572253 CCP110O43303 1012 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 TUBB4AP04350 444 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 SLC3A2P08195 630 aaKnown RBP12.51□□□□□ -0.41
CCDC40-207ENST00000572253 CCZ1BP86790 482 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 CCZ1P86791 482 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-207ENST00000572253 BRAPQ7Z569 592 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 FMR1NBQ8N0W7 255 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-207ENST00000572253 OSBPL5Q9H0X9 879 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-207ENST00000572253 FER1L4A9Z1Z3 1794 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 A0A1B0GVL5 298 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 CABP4P57796 275 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 CWC25Q9NXE8 425 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-207ENST00000572253 KIAA1468Q9P260 1216 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 ZNF215Q9UL58 517 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-207ENST00000572253 USP27XA6NNY8 438 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 SPTLC2O15270 562 aa12.51□□□□□ -0.41
CCDC40-207ENST00000572253 RALYLQ86SE5 291 aaKnown RBP12.51□□□□□ -0.41
CCDC40-207ENST00000572253 SALL1Q9NSC2 1324 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 WASHC4Q2M389 1173 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 TMC6Q7Z403 805 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 KRT222Q8N1A0 295 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 ORC3Q9UBD5 711 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-207ENST00000572253 MAST3O60307 1309 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 PPFIA3O75145 1194 aa12.5□□□□□ -0.41
CCDC40-207ENST00000572253 TIMM10P62072 90 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms