RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CADPS2Q86UW7 1296 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 IFNKQ9P0W0 207 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 SLC4A8Q2Y0W8 1093 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 FAM227BQ96M60 508 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 ARHGEF10O15013 1369 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 NEFHP12036 1026 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.57■□□□□ 0.4
CIITA-204ENST00000570546 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.57■□□□□ 0.4
CIITA-204ENST00000570546 V9GYY5 206 aaPredicted RBP17.57■□□□□ 0.4
CIITA-204ENST00000570546 SLF2Q8IX21 1173 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 TNNI3KQ59H18 835 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 FPGT-TNNI3KV9GXZ4 949 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 TTC37Q6PGP7 1564 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 GOLGA6L7A0A1B0GV03 622 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 IDEP14735 1019 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 SEPT7Q16181 437 aaKnown RBP17.56■□□□□ 0.4
CIITA-204ENST00000570546 DCAF5Q96JK2 942 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 VAT1LQ9HCJ6 419 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 PRDM15P57071 1507 aaPredicted RBP17.56■□□□□ 0.4
CIITA-204ENST00000570546 FAM160A1Q05DH4 1040 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 CCDC40Q4G0X9 1142 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 SPTY2D1Q68D10 685 aaPredicted RBP17.56■□□□□ 0.4
CIITA-204ENST00000570546 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.56■□□□□ 0.4
CIITA-204ENST00000570546 EHBP1Q8NDI1 1231 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 CLSTN2Q9H4D0 955 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 EXOC1Q9NV70 894 aa17.56■□□□□ 0.4
CIITA-204ENST00000570546 NBPF7P0C2Y1 421 aaPredicted RBP17.55■□□□□ 0.4
CIITA-204ENST00000570546 STAT6P42226 847 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 SMARCC1Q92922 1105 aaPredicted RBP17.55■□□□□ 0.4
CIITA-204ENST00000570546 DHX58Q96C10 678 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 SRRTQ9BXP5 876 aaKnown RBP17.55■□□□□ 0.4
CIITA-204ENST00000570546 ABCA8O94911 1581 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 BRD1O95696 1058 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 BAG3O95817 575 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 JADE2Q9NQC1 790 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 LDHCP07864 332 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 CTR9Q6PD62 1173 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 ADAMTS2O95450 1211 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 LIG1P18858 919 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 LMAN1P49257 510 aa17.55■□□□□ 0.4
CIITA-204ENST00000570546 RPGRQ92834 1020 aaKnown RBP17.55■□□□□ 0.4
CIITA-204ENST00000570546 SPAG1Q07617 926 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 METTL22Q9BUU2 404 aaPredicted RBP17.54■□□□□ 0.4
CIITA-204ENST00000570546 LGR6Q9HBX8 967 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 TMEM63CQ9P1W3 806 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 A0A1B0GVL5 298 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 IQSEC3Q9UPP2 1182 aaPredicted RBP17.54■□□□□ 0.4
CIITA-204ENST00000570546 TRIM75PA6NK02 468 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 PIP4K2BP78356 416 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 KLHDC4Q8TBB5 520 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 TRERF1Q96PN7 1200 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 KCNA6P17658 529 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 ARFGAP3Q9NP61 516 aa17.54■□□□□ 0.4
CIITA-204ENST00000570546 TRIM21P19474 475 aaKnown RBP17.53■□□□□ 0.4
CIITA-204ENST00000570546 FAM173BQ6P4H8 233 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 LLPHQ9BRT6 129 aaKnown RBP17.53■□□□□ 0.4
CIITA-204ENST00000570546 CCDC175P0C221 793 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 SUCLG2Q96I99 432 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 CTAGE15A4D2H0 777 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 CTAGE8P0CG41 777 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 GNAT2P19087 354 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 RXRAP19793 462 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 CTAGE6Q86UF2 777 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 CTAGE4Q8IX94 777 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 NAA15Q9BXJ9 866 aaKnown RBP17.53■□□□□ 0.4
CIITA-204ENST00000570546 SYT10Q6XYQ8 523 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 RTL9Q8NET4 1388 aa17.53■□□□□ 0.4
CIITA-204ENST00000570546 ANKRD18AQ8IVF6 992 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 TMOD2Q9NZR1 351 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 DBNDD2Q9BQY9 259 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 TBX22Q9Y458 520 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 SSH2Q76I76 1423 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 TNIP1Q15025 636 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 ZNF790Q6PG37 636 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 MAGEB6Q8N7X4 407 aa17.52■□□□□ 0.4
CIITA-204ENST00000570546 MYOM2P54296 1465 aa17.52■□□□□ 0.39
CIITA-204ENST00000570546 CABLES1Q8TDN4 633 aa17.52■□□□□ 0.39
CIITA-204ENST00000570546 CUL5Q93034 780 aa17.52■□□□□ 0.39
CIITA-204ENST00000570546 ELP1O95163 1332 aa17.52■□□□□ 0.39
CIITA-204ENST00000570546 CKAP4Q07065 602 aaKnown RBP17.51■□□□□ 0.39
CIITA-204ENST00000570546 LEO1Q8WVC0 666 aaPredicted RBP17.51■□□□□ 0.39
CIITA-204ENST00000570546 LRRC27Q9C0I9 530 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 CBX8Q9HC52 389 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 MAGEB6P1A0A0J9YX57 407 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 CYLC1P35663 651 aaPredicted RBP17.51■□□□□ 0.39
CIITA-204ENST00000570546 KRT2P35908 639 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 NAA16Q6N069 864 aaPredicted RBP17.51■□□□□ 0.39
CIITA-204ENST00000570546 CDC37L1Q7L3B6 337 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 PLBD2Q8NHP8 589 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 TSPY3P0CV98 308 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 TSPY8P0CW00 308 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 MATR3P43243 847 aaKnown RBP eCLIP17.51■□□□□ 0.39
CIITA-204ENST00000570546 SSR1P43307 286 aaKnown RBP17.51■□□□□ 0.39
CIITA-204ENST00000570546 IFFO1Q0D2I5 559 aa17.51■□□□□ 0.39
CIITA-204ENST00000570546 ZNF75DP51815 510 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 TIMM10P62072 90 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 GSTO1P78417 241 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 CEP112Q8N8E3 955 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 GOLGA1Q92805 767 aa17.5■□□□□ 0.39
CIITA-204ENST00000570546 STX8Q9UNK0 236 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms