RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 CA12O43570 354 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 CCT4P50991 539 aaKnown RBP11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 FLIIQ13045 1269 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 FKBP5Q13451 457 aaPredicted RBP11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 DGKZQ13574 1117 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 GCKRQ14397 625 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 CCDC27Q2M243 656 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 FAM161AQ3B820 660 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 NBPF9Q3BBW0 867 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 PODNQ7Z5L7 613 aa11.02□□□□□ -0.65
CTDNEP1-203ENST00000570385 TRPA1O75762 1119 aa11.01□□□□□ -0.65
CTDNEP1-203ENST00000570385 ITGA6P23229 1130 aa11.01□□□□□ -0.65
CTDNEP1-203ENST00000570385 IGHMBP2P38935 993 aaKnown RBP11.01□□□□□ -0.65
CTDNEP1-203ENST00000570385 DNAAF4Q8WXU2 420 aa11.01□□□□□ -0.65
CTDNEP1-203ENST00000570385 CCDC102AQ96A19 550 aa11.01□□□□□ -0.65
CTDNEP1-203ENST00000570385 FANCIQ9NVI1 1328 aa11.01□□□□□ -0.65
CTDNEP1-203ENST00000570385 MYH3P11055 1940 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 F6X3S4 739 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 UBE2Q2LH0YL09 131 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 SNAP23O00161 211 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 SASH1O94885 1247 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 CASP7P55210 303 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 EXOSC9Q06265 439 aaKnown RBP11□□□□□ -0.65
CTDNEP1-203ENST00000570385 DACT2Q5SW24 774 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 HELBQ8NG08 1087 aaPredicted RBP11□□□□□ -0.65
CTDNEP1-203ENST00000570385 CSRNP1Q96S65 589 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 MPHOSPH8Q99549 860 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 RNF186Q9NXI6 227 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 MED23Q9ULK4 1368 aa11□□□□□ -0.65
CTDNEP1-203ENST00000570385 VAMP4O75379 141 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 TAF5LO75529 589 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 SLC10A3P09131 477 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 KCNJ4P48050 445 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 GTF2IP78347 998 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 TTLL12Q14166 644 aaPredicted RBP10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 KIAA0825Q8IV33 1275 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 OGFOD1Q8N543 542 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 COA1Q9GZY4 146 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 MYH16Q9H6N6 1097 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 SPINK5Q9NQ38 1064 aaPredicted RBP10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 LEMD3Q9Y2U8 911 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 CHMP3Q9Y3E7 222 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 ZNF804BA4D1E1 1349 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 IL16Q14005 1332 aa10.99□□□□□ -0.65
CTDNEP1-203ENST00000570385 PSME4Q14997 1843 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 WNT10BO00744 389 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 CSF1RP07333 972 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 CHRNDQ07001 517 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 MKRN3Q13064 507 aaKnown RBP10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 PRKG1Q13976 671 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 STRIP1Q5VSL9 837 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 TTLL5Q6EMB2 1281 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 RASAL3Q86YV0 1011 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 LINS1Q8NG48 757 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 PLA2G12BQ9BX93 195 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 ANKRD2Q9GZV1 360 aa10.98□□□□□ -0.65
CTDNEP1-203ENST00000570385 ANKRD18BA2A2Z9 1011 aa10.97□□□□□ -0.65
CTDNEP1-203ENST00000570385 ANP32CO43423 234 aa10.97□□□□□ -0.65
CTDNEP1-203ENST00000570385 MLLT1Q03111 559 aaPredicted RBP10.97□□□□□ -0.65
CTDNEP1-203ENST00000570385 FZD1Q9UP38 647 aa10.97□□□□□ -0.65
CTDNEP1-203ENST00000570385 JAG2Q9Y219 1238 aa10.97□□□□□ -0.65
CTDNEP1-203ENST00000570385 ZNF609O15014 1411 aa10.97□□□□□ -0.65
CTDNEP1-203ENST00000570385 PITPNM2Q9BZ72 1349 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 F8W031 263 aaPredicted RBP10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 PLIN1O60240 522 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 FOXO4P98177 505 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 EPHA10Q5JZY3 1008 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 WDR63Q8IWG1 891 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 FAM9BQ8IZU0 186 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 ZNF594Q96JF6 807 aaPredicted RBP10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 CD209Q9NNX6 404 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 PCDHAC2Q9Y5I4 1007 aa10.96□□□□□ -0.65
CTDNEP1-203ENST00000570385 AKAP11Q9UKA4 1901 aa10.96□□□□□ -0.66
CTDNEP1-203ENST00000570385 MYO3BQ8WXR4 1341 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 TBC1D8O95759 1140 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 FKBP1BP68106 108 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 IFIT5Q13325 482 aaKnown RBP10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 BEND3Q5T5X7 828 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 SLC4A10Q6U841 1118 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 LMBR1LQ6UX01 489 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 CERS5Q8N5B7 392 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 SAGE1Q9NXZ1 904 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 HDAC9Q9UKV0 1011 aa10.95□□□□□ -0.66
CTDNEP1-203ENST00000570385 NF2P35240 595 aa10.94□□□□□ -0.66
CTDNEP1-203ENST00000570385 PTPN12Q05209 780 aaKnown RBP10.94□□□□□ -0.66
CTDNEP1-203ENST00000570385 TAF7LQ5H9L4 462 aa10.94□□□□□ -0.66
CTDNEP1-203ENST00000570385 PAPPA2Q9BXP8 1791 aa10.94□□□□□ -0.66
CTDNEP1-203ENST00000570385 ZNF646O15015 1829 aaPredicted RBP10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 CLRN2A0PK11 232 aa10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 ZNF316A6NFI3 1004 aaPredicted RBP10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 GRM8O00222 908 aa10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 RGS19P49795 217 aa10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 SOX10P56693 466 aa10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 DLGAP5Q15398 846 aa10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 CNNM1Q9NRU3 951 aa10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 C9orf78Q9NZ63 289 aaPredicted RBP10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 ANGEL1Q9UNK9 670 aaKnown RBP10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 PDE4DIPQ5VU43 2346 aa10.93□□□□□ -0.66
CTDNEP1-203ENST00000570385 CACNA1FO60840 1977 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms