RNA–Protein interactions for RNA: ENST00000570380.5

CTDNEP1-202, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 506 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-202ENST00000570380 CHPF2Q9P2E5 772 aa13.68□□□□□ -0.22
CTDNEP1-202ENST00000570380 ANGEL1Q9UNK9 670 aaKnown RBP13.68□□□□□ -0.22
CTDNEP1-202ENST00000570380 ECM29Q5VYK3 1845 aa13.68□□□□□ -0.22
CTDNEP1-202ENST00000570380 WTIPA6NIX2 430 aaPredicted RBP13.67□□□□□ -0.22
CTDNEP1-202ENST00000570380 DLL1O00548 723 aa13.67□□□□□ -0.22
CTDNEP1-202ENST00000570380 SASH1O94885 1247 aa13.67□□□□□ -0.22
CTDNEP1-202ENST00000570380 DACT2Q5SW24 774 aa13.67□□□□□ -0.22
CTDNEP1-202ENST00000570380 XDHP47989 1333 aa13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 H0YGN5 161 aa13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 TRIM28Q13263 835 aaKnown RBP13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 OGFOD1Q8N543 542 aa13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 SLC10A4Q96EP9 437 aa13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 WNK4Q96J92 1243 aa13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 TMEM106CQ9BVX2 250 aa13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 EFCC1Q9HA90 598 aa13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 RANBP2P49792 3224 aaKnown RBP13.66□□□□□ -0.22
CTDNEP1-202ENST00000570380 MAPK8IP3Q9UPT6 1336 aa13.65□□□□□ -0.22
CTDNEP1-202ENST00000570380 ATP2B4P23634 1241 aa13.65□□□□□ -0.22
CTDNEP1-202ENST00000570380 CRHR2Q13324 411 aa13.65□□□□□ -0.22
CTDNEP1-202ENST00000570380 APOBEC3FQ8IUX4 373 aaKnown RBP13.65□□□□□ -0.22
CTDNEP1-202ENST00000570380 ZNF333Q96JL9 665 aa13.65□□□□□ -0.22
CTDNEP1-202ENST00000570380 CLMNQ96JQ2 1002 aa13.65□□□□□ -0.22
CTDNEP1-202ENST00000570380 COL6A3P12111 3177 aa13.65□□□□□ -0.22
CTDNEP1-202ENST00000570380 MYH3P11055 1940 aa13.64□□□□□ -0.23
CTDNEP1-202ENST00000570380 ZBTB48P10074 688 aaPredicted RBP13.64□□□□□ -0.23
CTDNEP1-202ENST00000570380 RIPK4P57078 832 aa13.64□□□□□ -0.23
CTDNEP1-202ENST00000570380 MAP3K11Q16584 847 aa13.64□□□□□ -0.23
CTDNEP1-202ENST00000570380 ZBTB38Q8NAP3 1195 aaPredicted RBP13.64□□□□□ -0.23
CTDNEP1-202ENST00000570380 CCDC85AQ96PX6 553 aaPredicted RBP13.64□□□□□ -0.23
CTDNEP1-202ENST00000570380 MYO3BQ8WXR4 1341 aa13.64□□□□□ -0.23
CTDNEP1-202ENST00000570380 SSC5DA1L4H1 1573 aa13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 MED23Q9ULK4 1368 aa13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 SP3Q02447 781 aa13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 CCDC152Q4G0S7 254 aa13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 STRIP1Q5VSL9 837 aa13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 FBXW7Q969H0 707 aa13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 ZBED3Q96IU2 234 aaPredicted RBP13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 PNNQ9H307 717 aaKnown RBP13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 OTOFQ9HC10 1997 aa13.63□□□□□ -0.23
CTDNEP1-202ENST00000570380 ZSWIM8A7E2V4 1837 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 GJA5P36382 358 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 HDGFL1Q5TGJ6 251 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 CHRDL2Q6WN34 429 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 ANKRD18AQ8IVF6 992 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 SLC17A8Q8NDX2 589 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 JARID2Q92833 1246 aaPredicted RBP13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 PTPN18Q99952 460 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 DEFB129Q9H1M3 183 aa13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 DBF4Q9UBU7 674 aaPredicted RBP13.62□□□□□ -0.23
CTDNEP1-202ENST00000570380 COL1A1P02452 1464 aaPredicted RBP13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 CHL1O00533 1208 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 PDE8AO60658 829 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 MMP14P50281 582 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 SLC4A8Q2Y0W8 1093 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 SLC9C1Q4G0N8 1177 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 OTUD7BQ6GQQ9 843 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 KIAA0825Q8IV33 1275 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 RBM27Q9P2N5 1060 aaKnown RBP13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 PTCH2Q9Y6C5 1203 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 A0A0C4DFX4 3053 aa13.61□□□□□ -0.23
CTDNEP1-202ENST00000570380 PPP1R12BO60237 982 aaPredicted RBP13.6□□□□□ -0.23
CTDNEP1-202ENST00000570380 MYCP01106 439 aaPredicted RBP13.6□□□□□ -0.23
CTDNEP1-202ENST00000570380 HSP90B1P14625 803 aaKnown RBP13.6□□□□□ -0.23
CTDNEP1-202ENST00000570380 NBPF11Q86T75 865 aa13.6□□□□□ -0.23
CTDNEP1-202ENST00000570380 TXNRD3Q86VQ6 643 aa13.6□□□□□ -0.23
CTDNEP1-202ENST00000570380 TESPA1A2RU30 521 aaPredicted RBP13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 PCCAP05165 728 aaPredicted RBP13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 TMPOP42166 694 aaKnown RBP13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 CCT4P50991 539 aaKnown RBP13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 TTLL5Q6EMB2 1281 aa13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 RIC3Q7Z5B4 369 aa13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 CCER1Q8TC90 406 aaPredicted RBP13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 COA1Q9GZY4 146 aa13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 HYPKQ9NX55 129 aa13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 MINPP1Q9UNW1 487 aa13.59□□□□□ -0.23
CTDNEP1-202ENST00000570380 UNCXA6NJT0 531 aa13.58□□□□□ -0.24
CTDNEP1-202ENST00000570380 MYD88Q99836 296 aa13.58□□□□□ -0.24
CTDNEP1-202ENST00000570380 USP2O75604 605 aaPredicted RBP13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 HOXB7P09629 217 aa13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 LMOD3Q0VAK6 560 aa13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 NBPF12Q5TAG4 269 aaPredicted RBP13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 CCDC191Q8NCU4 936 aa13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 BSDC1Q9NW68 430 aaPredicted RBP13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 LAS1LQ9Y4W2 734 aaKnown RBP13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 PCDHAC2Q9Y5I4 1007 aa13.57□□□□□ -0.24
CTDNEP1-202ENST00000570380 CUL9Q8IWT3 2517 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 GTF2IP78347 998 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 DLGAP5Q15398 846 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 SH3TC2Q8TF17 1288 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 MS4A4AQ96JQ5 239 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 CDC5LQ99459 802 aaKnown RBP13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 PRO3102Q9H379 93 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 PHAXQ9H814 394 aaKnown RBP13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 PPP2R3BQ9Y5P8 575 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 ZNF804BA4D1E1 1349 aa13.56□□□□□ -0.24
CTDNEP1-202ENST00000570380 LAMA3Q16787 3333 aa13.55□□□□□ -0.24
CTDNEP1-202ENST00000570380 KLRK1P26718 216 aa13.55□□□□□ -0.24
CTDNEP1-202ENST00000570380 IREB2P48200 963 aaKnown RBP13.55□□□□□ -0.24
CTDNEP1-202ENST00000570380 GOLGA2Q08379 1002 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms