RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 TRIM27P14373 513 aa16.37■□□□□ 0.21
CNOT1-220ENST00000569916 RSBN1LQ6PCB5 846 aaPredicted RBP16.37■□□□□ 0.21
CNOT1-220ENST00000569916 C15orf52Q6ZUT6 534 aaKnown RBP16.37■□□□□ 0.21
CNOT1-220ENST00000569916 TNNQ9UQP3 1299 aa16.37■□□□□ 0.21
CNOT1-220ENST00000569916 ARAP2Q8WZ64 1704 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 USP17L3A6NCW0 530 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 USP17L4A6NCW7 530 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 H7C1D1 291 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 UBTFL1P0CB47 393 aaPredicted RBP16.36■□□□□ 0.21
CNOT1-220ENST00000569916 INTS3Q68E01 1043 aaKnown RBP16.36■□□□□ 0.21
CNOT1-220ENST00000569916 ATF7IPQ6VMQ6 1270 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 USP17L1Q7RTZ2 530 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 SAMD7Q7Z3H4 446 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 AGBL3Q8NEM8 1001 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 FRAT1Q92837 279 aaPredicted RBP16.36■□□□□ 0.21
CNOT1-220ENST00000569916 CREBZFQ9NS37 354 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 RIPOR2Q9Y4F9 1068 aa16.36■□□□□ 0.21
CNOT1-220ENST00000569916 IPO8O15397 1037 aaKnown RBP16.35■□□□□ 0.21
CNOT1-220ENST00000569916 PLIN1O60240 522 aa16.35■□□□□ 0.21
CNOT1-220ENST00000569916 EGFRP00533 1210 aa16.35■□□□□ 0.21
CNOT1-220ENST00000569916 KLRG1Q96E93 195 aa16.35■□□□□ 0.21
CNOT1-220ENST00000569916 GMLQ99445 158 aa16.35■□□□□ 0.21
CNOT1-220ENST00000569916 MEIS3Q99687 375 aa16.35■□□□□ 0.21
CNOT1-220ENST00000569916 PGAP2Q9UHJ9 254 aa16.35■□□□□ 0.21
CNOT1-220ENST00000569916 POLR2AP24928 1970 aaKnown RBP16.35■□□□□ 0.21
CNOT1-220ENST00000569916 RFX5P48382 616 aaPredicted RBP16.34■□□□□ 0.21
CNOT1-220ENST00000569916 TBC1D10BQ4KMP7 808 aaPredicted RBP16.34■□□□□ 0.21
CNOT1-220ENST00000569916 LRRC24Q50LG9 513 aa16.34■□□□□ 0.21
CNOT1-220ENST00000569916 DACT2Q5SW24 774 aa16.34■□□□□ 0.21
CNOT1-220ENST00000569916 KLHDC4Q8TBB5 520 aa16.34■□□□□ 0.21
CNOT1-220ENST00000569916 ZC3H15Q8WU90 426 aaKnown RBP16.34■□□□□ 0.21
CNOT1-220ENST00000569916 MROH5Q6ZUA9 1318 aa16.34■□□□□ 0.21
CNOT1-220ENST00000569916 ZNF280AP59817 542 aaPredicted RBP16.33■□□□□ 0.2
CNOT1-220ENST00000569916 FMR1Q06787 632 aaKnown RBP eCLIP16.33■□□□□ 0.21e-9■□□□□ 9.1
CNOT1-220ENST00000569916 KIF4BQ2VIQ3 1234 aa16.33■□□□□ 0.2
CNOT1-220ENST00000569916 STRIP1Q5VSL9 837 aa16.33■□□□□ 0.2
CNOT1-220ENST00000569916 MXD3Q9BW11 206 aa16.33■□□□□ 0.2
CNOT1-220ENST00000569916 CD209Q9NNX6 404 aa16.33■□□□□ 0.2
CNOT1-220ENST00000569916 LRRFIP2Q9Y608 721 aaKnown RBP16.33■□□□□ 0.2
CNOT1-220ENST00000569916 TMEM88BA6NKF7 163 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 TRAF5O00463 557 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 UBE4AQ14139 1066 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 ZKSCAN2Q63HK3 967 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 ZNF804AQ7Z570 1209 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 VGLL2Q8N8G2 317 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 MYO3BQ8WXR4 1341 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 FBXW7Q969H0 707 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 CLUAP1Q96AJ1 413 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 MYH13Q9UKX3 1938 aa16.32■□□□□ 0.2
CNOT1-220ENST00000569916 ECM29Q5VYK3 1845 aa16.31■□□□□ 0.2
CNOT1-220ENST00000569916 USP17L8P0C7I0 530 aa16.31■□□□□ 0.2
CNOT1-220ENST00000569916 IL1R1P14778 569 aa16.31■□□□□ 0.2
CNOT1-220ENST00000569916 PTPN12Q05209 780 aaKnown RBP16.31■□□□□ 0.2
CNOT1-220ENST00000569916 METTL24Q5JXM2 366 aa16.31■□□□□ 0.2
CNOT1-220ENST00000569916 RBM26Q5T8P6 1007 aaKnown RBP16.31■□□□□ 0.2
CNOT1-220ENST00000569916 GLIS2Q9BZE0 524 aaPredicted RBP16.31■□□□□ 0.2
CNOT1-220ENST00000569916 HDAC5Q9UQL6 1122 aa16.31■□□□□ 0.2
CNOT1-220ENST00000569916 GNAI3P08754 354 aa16.3■□□□□ 0.2
CNOT1-220ENST00000569916 GTF2IP78347 998 aa16.3■□□□□ 0.2
CNOT1-220ENST00000569916 TTLL5Q6EMB2 1281 aa16.3■□□□□ 0.2
CNOT1-220ENST00000569916 JMYQ8N9B5 988 aa16.3■□□□□ 0.2
CNOT1-220ENST00000569916 CNTNAP1P78357 1384 aa16.29■□□□□ 0.2
CNOT1-220ENST00000569916 EYA2O00167 538 aa16.29■□□□□ 0.2
CNOT1-220ENST00000569916 PDE8BO95263 885 aa16.29■□□□□ 0.2
CNOT1-220ENST00000569916 CDC37L1Q7L3B6 337 aa16.29■□□□□ 0.2
CNOT1-220ENST00000569916 TMEM57Q8N5G2 664 aa16.29■□□□□ 0.2
CNOT1-220ENST00000569916 MYOZ2Q9NPC6 264 aa16.29■□□□□ 0.2
CNOT1-220ENST00000569916 MKRN1Q9UHC7 482 aaKnown RBP16.29■□□□□ 0.2
CNOT1-220ENST00000569916 ASTN2O75129 1339 aaPredicted RBP16.28■□□□□ 0.2
CNOT1-220ENST00000569916 THSD7BQ9C0I4 1608 aa16.28■□□□□ 0.2
CNOT1-220ENST00000569916 GYG1P46976 350 aa16.28■□□□□ 0.2
CNOT1-220ENST00000569916 CST9Q5W186 159 aa16.28■□□□□ 0.2
CNOT1-220ENST00000569916 ATG9AQ7Z3C6 839 aa16.28■□□□□ 0.2
CNOT1-220ENST00000569916 CERS5Q8N5B7 392 aa16.28■□□□□ 0.2
CNOT1-220ENST00000569916 FAM84BQ96KN1 310 aaPredicted RBP16.28■□□□□ 0.2
CNOT1-220ENST00000569916 GGA3Q9NZ52 723 aa16.28■□□□□ 0.2
CNOT1-220ENST00000569916 MTX1Q13505 466 aa16.27■□□□□ 0.2
CNOT1-220ENST00000569916 TDRD7Q8NHU6 1098 aaKnown RBP16.27■□□□□ 0.2
CNOT1-220ENST00000569916 FBXO3Q9UK99 471 aa16.27■□□□□ 0.2
CNOT1-220ENST00000569916 FAM205AQ6ZU69 1335 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 RASSF10A6NK89 507 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 ADM5C9JUS6 153 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 CIAO1O76071 339 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 FGFR2P21802 821 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 HIBADHP31937 336 aaKnown RBP16.26■□□□□ 0.19
CNOT1-220ENST00000569916 FKBP1AP62942 108 aaKnown RBP16.26■□□□□ 0.19
CNOT1-220ENST00000569916 SCARF1Q14162 830 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 PUM3Q15397 648 aaKnown RBP16.26■□□□□ 0.19
CNOT1-220ENST00000569916 DLK2Q6UY11 383 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 KRT26Q7Z3Y9 468 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 USP48Q86UV5 1035 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 KIAA0825Q8IV33 1275 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 DCPSQ96C86 337 aaKnown RBP16.26■□□□□ 0.19
CNOT1-220ENST00000569916 SIL1Q9H173 461 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 PA2G4Q9UQ80 394 aaKnown RBP16.26■□□□□ 0.19
CNOT1-220ENST00000569916 JAG2Q9Y219 1238 aa16.26■□□□□ 0.19
CNOT1-220ENST00000569916 SASH1O94885 1247 aa16.25■□□□□ 0.19
CNOT1-220ENST00000569916 CELF2O95319 508 aaKnown RBP16.25■□□□□ 0.19
CNOT1-220ENST00000569916 GNAI2P04899 355 aa16.25■□□□□ 0.19
CNOT1-220ENST00000569916 RLBP1P12271 317 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms