RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 DCAF8Q5TAQ9 597 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 SULF1Q8IWU6 871 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 CCDC102AQ96A19 550 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 CDCA5Q96FF9 252 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 CDC5LQ99459 802 aaKnown RBP12.99□□□□□ -0.33
VPS39-211ENST00000568755 MCOLN1Q9GZU1 580 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 GREM2Q9H772 168 aa12.99□□□□□ -0.33
VPS39-211ENST00000568755 BSDC1Q9NW68 430 aaPredicted RBP12.99□□□□□ -0.33
VPS39-211ENST00000568755 PITPNM2Q9BZ72 1349 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 CCDC85CA6NKD9 419 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 NEURL1BA8MQ27 555 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 ZNF157P51786 506 aaPredicted RBP12.98□□□□□ -0.33
VPS39-211ENST00000568755 CCDC27Q2M243 656 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 CCDC184Q52MB2 194 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 ANGEL2Q5VTE6 544 aaKnown RBP12.98□□□□□ -0.33
VPS39-211ENST00000568755 PODNQ7Z5L7 613 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 MYOZ2Q9NPC6 264 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 SAGE1Q9NXZ1 904 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 MINPP1Q9UNW1 487 aa12.98□□□□□ -0.33
VPS39-211ENST00000568755 USP17L3A6NCW0 530 aa12.97□□□□□ -0.33
VPS39-211ENST00000568755 USP17L4A6NCW7 530 aa12.97□□□□□ -0.33
VPS39-211ENST00000568755 USP17L8P0C7I0 530 aa12.97□□□□□ -0.33
VPS39-211ENST00000568755 KIF23Q02241 960 aaPredicted RBP12.97□□□□□ -0.33
VPS39-211ENST00000568755 CWF19L2Q2TBE0 894 aaKnown RBP12.97□□□□□ -0.33
VPS39-211ENST00000568755 G2E3Q7L622 706 aa12.97□□□□□ -0.33
VPS39-211ENST00000568755 USP17L1Q7RTZ2 530 aa12.97□□□□□ -0.33
VPS39-211ENST00000568755 LAMB1P07942 1786 aa12.97□□□□□ -0.33
VPS39-211ENST00000568755 H7C1W4 665 aa12.96□□□□□ -0.33
VPS39-211ENST00000568755 NEXNQ0ZGT2 675 aa12.96□□□□□ -0.33
VPS39-211ENST00000568755 DGKZQ13574 1117 aa12.96□□□□□ -0.33
VPS39-211ENST00000568755 WWC1Q8IX03 1113 aa12.96□□□□□ -0.33
VPS39-211ENST00000568755 STK31Q9BXU1 1019 aa12.96□□□□□ -0.33
VPS39-211ENST00000568755 CCT4P50991 539 aaKnown RBP12.95□□□□□ -0.34
VPS39-211ENST00000568755 CASP7P55210 303 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 FKBP1BP68106 108 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 TWISTNBQ3B726 338 aaPredicted RBP12.95□□□□□ -0.34
VPS39-211ENST00000568755 DACT2Q5SW24 774 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 UBE3BQ7Z3V4 1068 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 TXNRD3Q86VQ6 643 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 RASAL3Q86YV0 1011 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 CSRNP1Q96S65 589 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 PLA2G12BQ9BX93 195 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 RNF186Q9NXI6 227 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 HTTP42858 3142 aa12.95□□□□□ -0.34
VPS39-211ENST00000568755 CENPFP49454 3210 aa12.94□□□□□ -0.34
VPS39-211ENST00000568755 IL16Q14005 1332 aa12.94□□□□□ -0.34
VPS39-211ENST00000568755 MLLT1Q03111 559 aaPredicted RBP12.94□□□□□ -0.34
VPS39-211ENST00000568755 GCKRQ14397 625 aa12.94□□□□□ -0.34
VPS39-211ENST00000568755 MXD3Q9BW11 206 aa12.94□□□□□ -0.34
VPS39-211ENST00000568755 SCAF8Q9UPN6 1271 aaKnown RBP12.94□□□□□ -0.34
VPS39-211ENST00000568755 MYO3BQ8WXR4 1341 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 ABCB7O75027 752 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 TRPA1O75762 1119 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 FLIIQ13045 1269 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 NBPF9Q3BBW0 867 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 STRIP1Q5VSL9 837 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 COA1Q9GZY4 146 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 LEMD3Q9Y2U8 911 aa12.93□□□□□ -0.34
VPS39-211ENST00000568755 WNT10BO00744 389 aa12.92□□□□□ -0.34
VPS39-211ENST00000568755 CSF1RP07333 972 aa12.92□□□□□ -0.34
VPS39-211ENST00000568755 ITGA6P23229 1130 aa12.92□□□□□ -0.34
VPS39-211ENST00000568755 KLRK1P26718 216 aa12.92□□□□□ -0.34
VPS39-211ENST00000568755 IGHMBP2P38935 993 aaKnown RBP12.92□□□□□ -0.34
VPS39-211ENST00000568755 MOB2Q70IA6 237 aa12.92□□□□□ -0.34
VPS39-211ENST00000568755 REM2Q8IYK8 340 aaPredicted RBP12.92□□□□□ -0.34
VPS39-211ENST00000568755 KIAA0100Q14667 2235 aaKnown RBP12.92□□□□□ -0.34
VPS39-211ENST00000568755 ZNF804BA4D1E1 1349 aa12.91□□□□□ -0.34
VPS39-211ENST00000568755 FANCIQ9NVI1 1328 aa12.91□□□□□ -0.34
VPS39-211ENST00000568755 IRS2Q9Y4H2 1338 aa12.91□□□□□ -0.34
VPS39-211ENST00000568755 MKI67P46013 3256 aaKnown RBP12.91□□□□□ -0.34
VPS39-211ENST00000568755 DNAAF4Q8WXU2 420 aa12.91□□□□□ -0.34
VPS39-211ENST00000568755 ARAP2Q8WZ64 1704 aa12.91□□□□□ -0.34
VPS39-211ENST00000568755 MMP14P50281 582 aa12.9□□□□□ -0.34
VPS39-211ENST00000568755 FKBP5Q13451 457 aaPredicted RBP12.9□□□□□ -0.34
VPS39-211ENST00000568755 PRAMEF18Q5VWM3 479 aa12.9□□□□□ -0.34
VPS39-211ENST00000568755 OGFOD1Q8N543 542 aa12.9□□□□□ -0.34
VPS39-211ENST00000568755 LINS1Q8NG48 757 aa12.9□□□□□ -0.34
VPS39-211ENST00000568755 ZBED3Q96IU2 234 aaPredicted RBP12.9□□□□□ -0.34
VPS39-211ENST00000568755 ANKRD2Q9GZV1 360 aa12.9□□□□□ -0.34
VPS39-211ENST00000568755 MYH16Q9H6N6 1097 aa12.9□□□□□ -0.34
VPS39-211ENST00000568755 OTOFQ9HC10 1997 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 UBE2Q2LH0YL09 131 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 VAMP4O75379 141 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 SASH1O94885 1247 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 CHRNDQ07001 517 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 TTLL5Q6EMB2 1281 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 FBXW7Q969H0 707 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 MPHOSPH8Q99549 860 aa12.89□□□□□ -0.35
VPS39-211ENST00000568755 BRCA2P51587 3418 aa12.88□□□□□ -0.35
VPS39-211ENST00000568755 C15orf52Q6ZUT6 534 aaKnown RBP12.88□□□□□ -0.35
VPS39-211ENST00000568755 CTU1Q7Z7A3 348 aaKnown RBP12.88□□□□□ -0.35
VPS39-211ENST00000568755 KIAA0825Q8IV33 1275 aa12.88□□□□□ -0.35
VPS39-211ENST00000568755 COL1A1P02452 1464 aaPredicted RBP12.88□□□□□ -0.35
VPS39-211ENST00000568755 ANKRD18BA2A2Z9 1011 aa12.87□□□□□ -0.35
VPS39-211ENST00000568755 SNAP23O00161 211 aa12.87□□□□□ -0.35
VPS39-211ENST00000568755 SLC34A2O95436 690 aa12.87□□□□□ -0.35
VPS39-211ENST00000568755 GTF2IP78347 998 aa12.87□□□□□ -0.35
VPS39-211ENST00000568755 FOXO4P98177 505 aa12.87□□□□□ -0.35
VPS39-211ENST00000568755 APOBEC3FQ8IUX4 373 aaKnown RBP12.87□□□□□ -0.35
VPS39-211ENST00000568755 WDR63Q8IWG1 891 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms