RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 SLC17A8Q8NDX2 589 aa15.53■□□□□ 0.08
VPS9D1-207ENST00000568691 CLMNQ96JQ2 1002 aa15.53■□□□□ 0.08
VPS9D1-207ENST00000568691 PRO3102Q9H379 93 aa15.53■□□□□ 0.08
VPS9D1-207ENST00000568691 ALDH1A1P00352 501 aa15.52■□□□□ 0.08
VPS9D1-207ENST00000568691 CRHR2Q13324 411 aa15.52■□□□□ 0.08
VPS9D1-207ENST00000568691 RTL5Q5HYW3 569 aaPredicted RBP15.52■□□□□ 0.08
VPS9D1-207ENST00000568691 PTPN18Q99952 460 aa15.52■□□□□ 0.08
VPS9D1-207ENST00000568691 USP17L3A6NCW0 530 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 USP17L4A6NCW7 530 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 ATP5J2-PTCD1G3V325 749 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 SASH1O94885 1247 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 NFE2L2Q16236 605 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 KRT24Q2M2I5 525 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 DACT2Q5SW24 774 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 USP17L1Q7RTZ2 530 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 ZBED3Q96IU2 234 aaPredicted RBP15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 EFCC1Q9HA90 598 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 GGA1Q9UJY5 639 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 LAMB1P07942 1786 aa15.51■□□□□ 0.07
VPS9D1-207ENST00000568691 MANSC4A6NHS7 340 aaPredicted RBP15.5■□□□□ 0.07
VPS9D1-207ENST00000568691 ERO1AQ96HE7 468 aa15.5■□□□□ 0.07
VPS9D1-207ENST00000568691 WNK4Q96J92 1243 aa15.5■□□□□ 0.07
VPS9D1-207ENST00000568691 YTHDC1Q96MU7 727 aaKnown RBP15.5■□□□□ 0.07
VPS9D1-207ENST00000568691 TSPYL4Q9UJ04 414 aa15.5■□□□□ 0.07
VPS9D1-207ENST00000568691 ANGEL1Q9UNK9 670 aaKnown RBP15.5■□□□□ 0.07
VPS9D1-207ENST00000568691 IRS4O14654 1257 aaPredicted RBP15.49■□□□□ 0.07
VPS9D1-207ENST00000568691 MAP3K11Q16584 847 aa15.49■□□□□ 0.07
VPS9D1-207ENST00000568691 ARMC9Q7Z3E5 817 aa15.49■□□□□ 0.07
VPS9D1-207ENST00000568691 PTCH2Q9Y6C5 1203 aa15.49■□□□□ 0.07
VPS9D1-207ENST00000568691 INHBEP58166 350 aa15.48■□□□□ 0.07
VPS9D1-207ENST00000568691 SHISA4Q96DD7 197 aa15.48■□□□□ 0.07
VPS9D1-207ENST00000568691 ANKIB1Q9P2G1 1089 aa15.48■□□□□ 0.07
VPS9D1-207ENST00000568691 SOX1O00570 391 aaPredicted RBP15.47■□□□□ 0.07
VPS9D1-207ENST00000568691 ZBTB48P10074 688 aaPredicted RBP15.47■□□□□ 0.07
VPS9D1-207ENST00000568691 NF2P35240 595 aa15.47■□□□□ 0.07
VPS9D1-207ENST00000568691 PODNQ7Z5L7 613 aa15.47■□□□□ 0.07
VPS9D1-207ENST00000568691 PLBD2Q8NHP8 589 aa15.47■□□□□ 0.07
VPS9D1-207ENST00000568691 TMEM106CQ9BVX2 250 aa15.47■□□□□ 0.07
VPS9D1-207ENST00000568691 CHPF2Q9P2E5 772 aa15.47■□□□□ 0.07
VPS9D1-207ENST00000568691 TESPA1A2RU30 521 aaPredicted RBP15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 G3V3G9 751 aa15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 SP3Q02447 781 aa15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 CCDC184Q52MB2 194 aa15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 DCAF8Q5TAQ9 597 aa15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 TXNRD3Q86VQ6 643 aa15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 SLC10A4Q96EP9 437 aa15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.46■□□□□ 0.07
VPS9D1-207ENST00000568691 AOX1Q06278 1338 aa15.45■□□□□ 0.06
VPS9D1-207ENST00000568691 MYCP01106 439 aaPredicted RBP15.45■□□□□ 0.06
VPS9D1-207ENST00000568691 TRIM28Q13263 835 aaKnown RBP15.45■□□□□ 0.06
VPS9D1-207ENST00000568691 PCDHAC2Q9Y5I4 1007 aa15.45■□□□□ 0.06
VPS9D1-207ENST00000568691 XDHP47989 1333 aa15.44■□□□□ 0.06
VPS9D1-207ENST00000568691 ANKRD13DQ6ZTN6 518 aa15.44■□□□□ 0.06
VPS9D1-207ENST00000568691 UBE2Q1Q7Z7E8 422 aa15.44■□□□□ 0.06
VPS9D1-207ENST00000568691 SLC9C1Q4G0N8 1177 aa15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 APOBEC3FQ8IUX4 373 aaKnown RBP15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 SH3TC2Q8TF17 1288 aa15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 JARID2Q92833 1246 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 MS4A4AQ96JQ5 239 aa15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 CCDC85AQ96PX6 553 aaPredicted RBP15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 DEFB129Q9H1M3 183 aa15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 ZSWIM8A7E2V4 1837 aa15.43■□□□□ 0.06
VPS9D1-207ENST00000568691 MED23Q9ULK4 1368 aa15.42■□□□□ 0.06
VPS9D1-207ENST00000568691 ATP2B4P23634 1241 aa15.42■□□□□ 0.06
VPS9D1-207ENST00000568691 SLC4A8Q2Y0W8 1093 aa15.42■□□□□ 0.06
VPS9D1-207ENST00000568691 STRIP1Q5VSL9 837 aa15.42■□□□□ 0.06
VPS9D1-207ENST00000568691 LRCH3Q96II8 777 aa15.42■□□□□ 0.06
VPS9D1-207ENST00000568691 ARHGAP39Q9C0H5 1083 aa15.42■□□□□ 0.06
VPS9D1-207ENST00000568691 ZBED9Q6R2W3 1325 aa15.42■□□□□ 0.06
VPS9D1-207ENST00000568691 USP2O75604 605 aaPredicted RBP15.41■□□□□ 0.06
VPS9D1-207ENST00000568691 KLRK1P26718 216 aa15.41■□□□□ 0.06
VPS9D1-207ENST00000568691 KIAA0825Q8IV33 1275 aa15.41■□□□□ 0.06
VPS9D1-207ENST00000568691 OGFOD1Q8N543 542 aa15.41■□□□□ 0.06
VPS9D1-207ENST00000568691 ZBTB38Q8NAP3 1195 aaPredicted RBP15.41■□□□□ 0.06
VPS9D1-207ENST00000568691 UNC80Q8N2C7 3258 aa15.41■□□□□ 0.06
VPS9D1-207ENST00000568691 COL1A1P02452 1464 aaPredicted RBP15.4■□□□□ 0.06
VPS9D1-207ENST00000568691 MTFR1Q15390 333 aa15.4■□□□□ 0.06
VPS9D1-207ENST00000568691 NBPF12Q5TAG4 269 aaPredicted RBP15.4■□□□□ 0.06
VPS9D1-207ENST00000568691 CNKSR2Q8WXI2 1034 aa15.4■□□□□ 0.06
VPS9D1-207ENST00000568691 BRI3BPQ8WY22 251 aa15.4■□□□□ 0.06
VPS9D1-207ENST00000568691 BABAM1Q9NWV8 329 aa15.4■□□□□ 0.06
VPS9D1-207ENST00000568691 MNX1P50219 401 aaPredicted RBP15.39■□□□□ 0.05
VPS9D1-207ENST00000568691 FAM9BQ8IZU0 186 aa15.39■□□□□ 0.05
VPS9D1-207ENST00000568691 CERS5Q8N5B7 392 aa15.39■□□□□ 0.05
VPS9D1-207ENST00000568691 MINPP1Q9UNW1 487 aa15.39■□□□□ 0.05
VPS9D1-207ENST00000568691 MYO3BQ8WXR4 1341 aa15.39■□□□□ 0.05
VPS9D1-207ENST00000568691 CHL1O00533 1208 aa15.38■□□□□ 0.05
VPS9D1-207ENST00000568691 CTGFP29279 349 aa15.38■□□□□ 0.05
VPS9D1-207ENST00000568691 NBPF11Q86T75 865 aa15.38■□□□□ 0.05
VPS9D1-207ENST00000568691 FBXW7Q969H0 707 aa15.38■□□□□ 0.05
VPS9D1-207ENST00000568691 UNCXA6NJT0 531 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 HNRNPUQ00839 825 aaKnown RBP eCLIP15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 CCDC152Q4G0S7 254 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 ANKRD18AQ8IVF6 992 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 CDAN1Q8IWY9 1227 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 FAM43AQ8N2R8 423 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 DPF3Q92784 378 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 COA1Q9GZY4 146 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 ZNF804BA4D1E1 1349 aa15.37■□□□□ 0.05
VPS9D1-207ENST00000568691 OTOFQ9HC10 1997 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms