RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ARID5BQ14865 1188 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 NR6A1Q15406 480 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 TMC7Q7Z402 723 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 C11orf96Q7Z7L8 435 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 NEDD1Q8NHV4 660 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 PMFBP1Q8TBY8 1022 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 FAM200AQ8TCP9 573 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 CDK15Q96Q40 435 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 SETDB2Q96T68 719 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 KANSL2Q9H9L4 492 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 CXXC1Q9P0U4 656 aaPredicted RBP4.06□□□□□ -1.76
VPS35-209ENST00000568642 PNMA2Q9UL42 364 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 KIAA1024Q9UPX6 916 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 EMILIN1Q9Y6C2 1016 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 TNS1Q9HBL0 1735 aaKnown RBP4.06□□□□□ -1.76
VPS35-209ENST00000568642 ABCA6Q8N139 1617 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 TIAM1Q13009 1591 aa4.06□□□□□ -1.76
VPS35-209ENST00000568642 DLC1Q96QB1 1528 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 TNRC18O15417 2968 aaPredicted RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 ATRNO75882 1429 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 NUP188Q5SRE5 1749 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 TNFRSF10BO14763 440 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 CTSHP09668 335 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 CCNYL3P0C7X3 344 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 HSPA1AP0DMV8 641 aaKnown RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 HSPA1BP0DMV9 641 aaKnown RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 POU3F3P20264 500 aaPredicted RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 DAB2P98082 770 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 DPYDQ12882 1025 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 TSGA10IPQ3SY00 556 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 PLEKHG4Q58EX7 1191 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 TSHZ1Q6ZSZ6 1077 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 FAM43BQ6ZT52 329 aaPredicted RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 TMC4Q7Z404 712 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 TMEM87AQ8NBN3 555 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 PLCD4Q9BRC7 762 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 IER2Q9BTL4 223 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 RBCK1Q9BYM8 510 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 SEMA6BQ9H3T3 888 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 ZBTB3Q9H5J0 574 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 PARP2Q9UGN5 583 aa4.05□□□□□ -1.76
VPS35-209ENST00000568642 DDX41Q9UJV9 622 aaKnown RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 G3BP2Q9UN86 482 aaKnown RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 KDM5AP29375 1690 aaKnown RBP4.05□□□□□ -1.76
VPS35-209ENST00000568642 ATP10DQ9P241 1426 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 TMEM94Q12767 1356 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 HOXA2O43364 376 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 GRM5P41594 1212 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 GYS2P54840 703 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 SNRPNP63162 240 aaKnown RBP4.04□□□□□ -1.76
VPS35-209ENST00000568642 KCNH2Q12809 1159 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 NR1H3Q13133 447 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 RNF135Q8IUD6 432 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 HELBQ8NG08 1087 aaPredicted RBP4.04□□□□□ -1.76
VPS35-209ENST00000568642 GTF3C2Q8WUA4 911 aaPredicted RBP4.04□□□□□ -1.76
VPS35-209ENST00000568642 RNF34Q969K3 372 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 TSEN34Q9BSV6 310 aaKnown RBP4.04□□□□□ -1.76
VPS35-209ENST00000568642 CHST12Q9NRB3 414 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 TTF2Q9UNY4 1162 aaKnown RBP4.04□□□□□ -1.76
VPS35-209ENST00000568642 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.04□□□□□ -1.76
VPS35-209ENST00000568642 ATP7AQ04656 1500 aa4.04□□□□□ -1.76
VPS35-209ENST00000568642 RREB1Q92766 1687 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 MSH6P52701 1360 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 SCO2A0A1W2PP80 73 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 PRMT3O60678 531 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 BCRP11274 1271 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 SKIP12755 728 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 RASA1P20936 1047 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 DNAJA1P31689 397 aaKnown RBP4.03□□□□□ -1.76
VPS35-209ENST00000568642 RGS19P49795 217 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 NR5A1Q13285 461 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 NCOA4Q13772 614 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 MAP9Q49MG5 647 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 FILIP1Q7Z7B0 1213 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 FMNL3Q8IVF7 1028 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 CCDC146Q8IYE0 955 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 ACDQ96AP0 544 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 PRIMPOLQ96LW4 560 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 DUSP9Q99956 384 aaKnown RBP4.03□□□□□ -1.76
VPS35-209ENST00000568642 OCSTAMPQ9BR26 566 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 CFHR5Q9BXR6 569 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 GNL3LQ9NVN8 582 aaKnown RBP4.03□□□□□ -1.76
VPS35-209ENST00000568642 MARF1Q9Y4F3 1742 aaKnown RBP4.03□□□□□ -1.76
VPS35-209ENST00000568642 SCAPERQ9BY12 1400 aa4.03□□□□□ -1.76
VPS35-209ENST00000568642 GOLGB1Q14789 3259 aaKnown RBP4.03□□□□□ -1.77
VPS35-209ENST00000568642 ABCC3O15438 1527 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.02□□□□□ -1.77
VPS35-209ENST00000568642 ABL1P00519 1130 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 PDGFRBP09619 1106 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 FKBP4Q02790 459 aaKnown RBP eCLIP4.02□□□□□ -1.77
VPS35-209ENST00000568642 GPR162Q16538 588 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 ZNF394Q53GI3 561 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 HSP90AB2PQ58FF8 381 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 NUTM1Q86Y26 1132 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 RPS6KC1Q96S38 1066 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 KRTAP17-1Q9BYP8 105 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 C12orf49Q9H741 205 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 UGGT1Q9NYU2 1555 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 IGF1RP08069 1367 aa4.02□□□□□ -1.77
VPS35-209ENST00000568642 FAM135AQ9P2D6 1515 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms