RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 FANCIQ9NVI1 1328 aa19.11■□□□□ 0.65
CLN3-236ENST00000568558 USP17L8P0C7I0 530 aa19.11■□□□□ 0.65
CLN3-236ENST00000568558 CCT4P50991 539 aaKnown RBP19.11■□□□□ 0.65
CLN3-236ENST00000568558 ANGEL2Q5VTE6 544 aaKnown RBP19.11■□□□□ 0.65
CLN3-236ENST00000568558 PLA2G12BQ9BX93 195 aa19.11■□□□□ 0.65
CLN3-236ENST00000568558 MYOZ2Q9NPC6 264 aa19.11■□□□□ 0.65
CLN3-236ENST00000568558 CASP7P55210 303 aa19.1■□□□□ 0.65
CLN3-236ENST00000568558 GCKRQ14397 625 aa19.1■□□□□ 0.65
CLN3-236ENST00000568558 MRS2Q9HD23 443 aa19.1■□□□□ 0.65
CLN3-236ENST00000568558 PITPNM2Q9BZ72 1349 aa19.09■□□□□ 0.65
CLN3-236ENST00000568558 IGHMBP2P38935 993 aaKnown RBP19.09■□□□□ 0.65
CLN3-236ENST00000568558 ZNF157P51786 506 aaPredicted RBP19.09■□□□□ 0.65
CLN3-236ENST00000568558 FKBP5Q13451 457 aaPredicted RBP19.09■□□□□ 0.65
CLN3-236ENST00000568558 DNAAF4Q8WXU2 420 aa19.09■□□□□ 0.65
CLN3-236ENST00000568558 CCDC102AQ96A19 550 aa19.09■□□□□ 0.65
CLN3-236ENST00000568558 MYH16Q9H6N6 1097 aa19.09■□□□□ 0.65
CLN3-236ENST00000568558 ITGA6P23229 1130 aa19.08■□□□□ 0.64
CLN3-236ENST00000568558 FAM161AQ3B820 660 aa19.08■□□□□ 0.64
CLN3-236ENST00000568558 DACT2Q5SW24 774 aa19.08■□□□□ 0.64
CLN3-236ENST00000568558 LINS1Q8NG48 757 aa19.08■□□□□ 0.64
CLN3-236ENST00000568558 LEMD3Q9Y2U8 911 aa19.08■□□□□ 0.64
CLN3-236ENST00000568558 ECM29Q5VYK3 1845 aa19.08■□□□□ 0.64
CLN3-236ENST00000568558 CSF1RP07333 972 aa19.07■□□□□ 0.64
CLN3-236ENST00000568558 SLC10A3P09131 477 aa19.07■□□□□ 0.64
CLN3-236ENST00000568558 KIF23Q02241 960 aaPredicted RBP19.07■□□□□ 0.64
CLN3-236ENST00000568558 TXNRD3Q86VQ6 643 aa19.07■□□□□ 0.64
CLN3-236ENST00000568558 WDR63Q8IWG1 891 aa19.07■□□□□ 0.64
CLN3-236ENST00000568558 COA1Q9GZY4 146 aa19.07■□□□□ 0.64
CLN3-236ENST00000568558 MYO3BQ8WXR4 1341 aa19.06■□□□□ 0.64
CLN3-236ENST00000568558 VAMP4O75379 141 aa19.06■□□□□ 0.64
CLN3-236ENST00000568558 STRIP1Q5VSL9 837 aa19.06■□□□□ 0.64
CLN3-236ENST00000568558 MXD3Q9BW11 206 aa19.06■□□□□ 0.64
CLN3-236ENST00000568558 ANKRD2Q9GZV1 360 aa19.06■□□□□ 0.64
CLN3-236ENST00000568558 SAGE1Q9NXZ1 904 aa19.06■□□□□ 0.64
CLN3-236ENST00000568558 ZNF804BA4D1E1 1349 aa19.05■□□□□ 0.64
CLN3-236ENST00000568558 FKBP1BP68106 108 aa19.05■□□□□ 0.64
CLN3-236ENST00000568558 EXOSC9Q06265 439 aaKnown RBP19.05■□□□□ 0.64
CLN3-236ENST00000568558 NBPF9Q3BBW0 867 aa19.05■□□□□ 0.64
CLN3-236ENST00000568558 FBXW7Q969H0 707 aa19.05■□□□□ 0.64
CLN3-236ENST00000568558 MPHOSPH8Q99549 860 aa19.05■□□□□ 0.64
CLN3-236ENST00000568558 MCOLN1Q9GZU1 580 aa19.05■□□□□ 0.64
CLN3-236ENST00000568558 SALL2Q9Y467 1007 aaPredicted RBP19.05■□□□□ 0.64
CLN3-236ENST00000568558 CCDC85CA6NKD9 419 aa19.04■□□□□ 0.64
CLN3-236ENST00000568558 KLRK1P26718 216 aa19.04■□□□□ 0.64
CLN3-236ENST00000568558 SCAF8Q9UPN6 1271 aaKnown RBP19.04■□□□□ 0.64
CLN3-236ENST00000568558 ANP32CO43423 234 aa19.03■□□□□ 0.64
CLN3-236ENST00000568558 RASAL3Q86YV0 1011 aa19.03■□□□□ 0.64
CLN3-236ENST00000568558 OGFOD1Q8N543 542 aa19.03■□□□□ 0.64
CLN3-236ENST00000568558 WNT10BO00744 389 aa19.02■□□□□ 0.64
CLN3-236ENST00000568558 CHRNDQ07001 517 aa19.02■□□□□ 0.64
CLN3-236ENST00000568558 DGKZQ13574 1117 aa19.02■□□□□ 0.64
CLN3-236ENST00000568558 CSRNP1Q96S65 589 aa19.02■□□□□ 0.64
CLN3-236ENST00000568558 RNF186Q9NXI6 227 aa19.02■□□□□ 0.64
CLN3-236ENST00000568558 ANKRD18BA2A2Z9 1011 aa19.01■□□□□ 0.63
CLN3-236ENST00000568558 F6X3S4 739 aa19.01■□□□□ 0.63
CLN3-236ENST00000568558 TRPA1O75762 1119 aa19.01■□□□□ 0.63
CLN3-236ENST00000568558 MMP14P50281 582 aa19.01■□□□□ 0.63
CLN3-236ENST00000568558 TTLL5Q6EMB2 1281 aa19.01■□□□□ 0.63
CLN3-236ENST00000568558 SPINK5Q9NQ38 1064 aaPredicted RBP19.01■□□□□ 0.63
CLN3-236ENST00000568558 ZNF316A6NFI3 1004 aaPredicted RBP19■□□□□ 0.63
CLN3-236ENST00000568558 SASH1O94885 1247 aa19■□□□□ 0.63
CLN3-236ENST00000568558 KCNJ4P48050 445 aa19■□□□□ 0.63
CLN3-236ENST00000568558 FOXO4P98177 505 aa19■□□□□ 0.63
CLN3-236ENST00000568558 BEND3Q5T5X7 828 aa19■□□□□ 0.63
CLN3-236ENST00000568558 MOB2Q70IA6 237 aa19■□□□□ 0.63
CLN3-236ENST00000568558 IRS2Q9Y4H2 1338 aa19■□□□□ 0.63
CLN3-236ENST00000568558 RGS19P49795 217 aa18.99■□□□□ 0.63
CLN3-236ENST00000568558 GTF2IP78347 998 aa18.99■□□□□ 0.63
CLN3-236ENST00000568558 PRAMEF18Q5VWM3 479 aa18.99■□□□□ 0.63
CLN3-236ENST00000568558 KIAA0825Q8IV33 1275 aa18.99■□□□□ 0.63
CLN3-236ENST00000568558 REM2Q8IYK8 340 aaPredicted RBP18.99■□□□□ 0.63
CLN3-236ENST00000568558 UBE2Q2LH0YL09 131 aa18.98■□□□□ 0.63
CLN3-236ENST00000568558 IFIT5Q13325 482 aaKnown RBP18.98■□□□□ 0.63
CLN3-236ENST00000568558 CD209Q9NNX6 404 aa18.98■□□□□ 0.63
CLN3-236ENST00000568558 HDAC9Q9UKV0 1011 aa18.98■□□□□ 0.63
CLN3-236ENST00000568558 LAMB1P07942 1786 aa18.98■□□□□ 0.63
CLN3-236ENST00000568558 ARAP2Q8WZ64 1704 aa18.97■□□□□ 0.63
CLN3-236ENST00000568558 SNAP23O00161 211 aa18.97■□□□□ 0.63
CLN3-236ENST00000568558 TAF5LO75529 589 aa18.97■□□□□ 0.63
CLN3-236ENST00000568558 C15orf52Q6ZUT6 534 aaKnown RBP18.97■□□□□ 0.63
CLN3-236ENST00000568558 ZBED3Q96IU2 234 aaPredicted RBP18.97■□□□□ 0.63
CLN3-236ENST00000568558 CHMP3Q9Y3E7 222 aa18.97■□□□□ 0.63
CLN3-236ENST00000568558 COL1A1P02452 1464 aaPredicted RBP18.97■□□□□ 0.63
CLN3-236ENST00000568558 NF2P35240 595 aa18.96■□□□□ 0.63
CLN3-236ENST00000568558 APOBEC3FQ8IUX4 373 aaKnown RBP18.96■□□□□ 0.63
CLN3-236ENST00000568558 HELBQ8NG08 1087 aaPredicted RBP18.96■□□□□ 0.63
CLN3-236ENST00000568558 GRM8O00222 908 aa18.95■□□□□ 0.62
CLN3-236ENST00000568558 MLLT1Q03111 559 aaPredicted RBP18.95■□□□□ 0.62
CLN3-236ENST00000568558 TTLL12Q14166 644 aaPredicted RBP18.95■□□□□ 0.62
CLN3-236ENST00000568558 EPHA10Q5JZY3 1008 aa18.95■□□□□ 0.62
CLN3-236ENST00000568558 LMBR1LQ6UX01 489 aa18.95■□□□□ 0.62
CLN3-236ENST00000568558 CERS5Q8N5B7 392 aa18.95■□□□□ 0.62
CLN3-236ENST00000568558 IL1R1P14778 569 aa18.93■□□□□ 0.62
CLN3-236ENST00000568558 CCDC57Q2TAC2 916 aa18.93■□□□□ 0.62
CLN3-236ENST00000568558 ZNF804AQ7Z570 1209 aa18.93■□□□□ 0.62
CLN3-236ENST00000568558 FAM9BQ8IZU0 186 aa18.93■□□□□ 0.62
CLN3-236ENST00000568558 ZNF594Q96JF6 807 aaPredicted RBP18.93■□□□□ 0.62
CLN3-236ENST00000568558 ALDH1L1O75891 902 aa18.92■□□□□ 0.62
CLN3-236ENST00000568558 DLGAP5Q15398 846 aa18.92■□□□□ 0.62
CLN3-236ENST00000568558 LDHAL6AQ6ZMR3 332 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms