RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 KRT24Q2M2I5 525 aa21.92■■□□□ 1.1
CDH3-205ENST00000566808 CCDC152Q4G0S7 254 aa21.92■■□□□ 1.1
CDH3-205ENST00000566808 APOBEC3FQ8IUX4 373 aaKnown RBP21.92■■□□□ 1.1
CDH3-205ENST00000566808 ZBTB38Q8NAP3 1195 aaPredicted RBP21.92■■□□□ 1.1
CDH3-205ENST00000566808 DBF4Q9UBU7 674 aaPredicted RBP21.92■■□□□ 1.1
CDH3-205ENST00000566808 HOXB7P09629 217 aa21.91■■□□□ 1.1
CDH3-205ENST00000566808 ATP2B4P23634 1241 aa21.91■■□□□ 1.1
CDH3-205ENST00000566808 INHBEP58166 350 aa21.91■■□□□ 1.1
CDH3-205ENST00000566808 LDLRAD1Q5T700 205 aa21.91■■□□□ 1.1
CDH3-205ENST00000566808 ARMC5Q96C12 935 aa21.91■■□□□ 1.1
CDH3-205ENST00000566808 ERO1AQ96HE7 468 aa21.91■■□□□ 1.1
CDH3-205ENST00000566808 MMP14P50281 582 aa21.9■■□□□ 1.1
CDH3-205ENST00000566808 DACT2Q5SW24 774 aa21.9■■□□□ 1.1
CDH3-205ENST00000566808 IFNL1Q8IU54 200 aa21.9■■□□□ 1.1
CDH3-205ENST00000566808 RANBP2P49792 3224 aaKnown RBP21.89■■□□□ 1.09
CDH3-205ENST00000566808 SASH1O94885 1247 aa21.89■■□□□ 1.09
CDH3-205ENST00000566808 ZBTB48P10074 688 aaPredicted RBP21.89■■□□□ 1.09
CDH3-205ENST00000566808 HYPKQ9NX55 129 aa21.89■■□□□ 1.09
CDH3-205ENST00000566808 PTPN22Q9Y2R2 807 aa21.89■■□□□ 1.09
CDH3-205ENST00000566808 PRKG1Q13976 671 aa21.88■■□□□ 1.09
CDH3-205ENST00000566808 ANKRD18AQ8IVF6 992 aa21.88■■□□□ 1.09
CDH3-205ENST00000566808 ANGEL1Q9UNK9 670 aaKnown RBP21.88■■□□□ 1.09
CDH3-205ENST00000566808 CUL9Q8IWT3 2517 aa21.88■■□□□ 1.09
CDH3-205ENST00000566808 CHL1O00533 1208 aa21.87■■□□□ 1.09
CDH3-205ENST00000566808 EN2P19622 333 aaPredicted RBP21.87■■□□□ 1.09
CDH3-205ENST00000566808 TMPOP42166 694 aaKnown RBP21.87■■□□□ 1.09
CDH3-205ENST00000566808 IGF2BP3O00425 579 aaKnown RBP eCLIP21.86■■□□□ 1.09
CDH3-205ENST00000566808 PDE8AO60658 829 aa21.86■■□□□ 1.09
CDH3-205ENST00000566808 STRIP1Q5VSL9 837 aa21.86■■□□□ 1.09
CDH3-205ENST00000566808 COLQQ9Y215 455 aaPredicted RBP21.86■■□□□ 1.09
CDH3-205ENST00000566808 CD99L2Q8TCZ2 262 aa21.85■■□□□ 1.09
CDH3-205ENST00000566808 MXD3Q9BW11 206 aa21.85■■□□□ 1.09
CDH3-205ENST00000566808 SSC5DA1L4H1 1573 aa21.85■■□□□ 1.09
CDH3-205ENST00000566808 PCCAP05165 728 aaPredicted RBP21.84■■□□□ 1.09
CDH3-205ENST00000566808 GOLGA2Q08379 1002 aa21.84■■□□□ 1.09
CDH3-205ENST00000566808 MAP3K11Q16584 847 aa21.84■■□□□ 1.09
CDH3-205ENST00000566808 FBXW7Q969H0 707 aa21.84■■□□□ 1.09
CDH3-205ENST00000566808 SLC10A4Q96EP9 437 aa21.84■■□□□ 1.09
CDH3-205ENST00000566808 WNK4Q96J92 1243 aa21.84■■□□□ 1.09
CDH3-205ENST00000566808 EFCC1Q9HA90 598 aa21.84■■□□□ 1.09
CDH3-205ENST00000566808 OTOFQ9HC10 1997 aa21.84■■□□□ 1.09
CDH3-205ENST00000566808 RIC3Q7Z5B4 369 aa21.83■■□□□ 1.09
CDH3-205ENST00000566808 CCDC191Q8NCU4 936 aa21.83■■□□□ 1.09
CDH3-205ENST00000566808 CCDC85AQ96PX6 553 aaPredicted RBP21.83■■□□□ 1.09
CDH3-205ENST00000566808 CDC5LQ99459 802 aaKnown RBP21.83■■□□□ 1.09
CDH3-205ENST00000566808 TMEM106CQ9BVX2 250 aa21.83■■□□□ 1.09
CDH3-205ENST00000566808 COA1Q9GZY4 146 aa21.83■■□□□ 1.09
CDH3-205ENST00000566808 UNCXA6NJT0 531 aa21.82■■□□□ 1.08
CDH3-205ENST00000566808 CRHR2Q13324 411 aa21.82■■□□□ 1.08
CDH3-205ENST00000566808 OTUD7BQ6GQQ9 843 aa21.82■■□□□ 1.08
CDH3-205ENST00000566808 ZNF333Q96JL9 665 aa21.82■■□□□ 1.08
CDH3-205ENST00000566808 ZBED3Q96IU2 234 aaPredicted RBP21.81■■□□□ 1.08
CDH3-205ENST00000566808 PPP1R12BO60237 982 aaPredicted RBP21.8■■□□□ 1.08
CDH3-205ENST00000566808 CLMNQ96JQ2 1002 aa21.8■■□□□ 1.08
CDH3-205ENST00000566808 DEFB129Q9H1M3 183 aa21.8■■□□□ 1.08
CDH3-205ENST00000566808 CWC25Q9NXE8 425 aaPredicted RBP21.8■■□□□ 1.08
CDH3-205ENST00000566808 FZD1Q9UP38 647 aa21.8■■□□□ 1.08
CDH3-205ENST00000566808 LAS1LQ9Y4W2 734 aaKnown RBP21.8■■□□□ 1.08
CDH3-205ENST00000566808 PPP2R3BQ9Y5P8 575 aa21.8■■□□□ 1.08
CDH3-205ENST00000566808 WTIPA6NIX2 430 aaPredicted RBP21.79■■□□□ 1.08
CDH3-205ENST00000566808 CCT4P50991 539 aaKnown RBP21.79■■□□□ 1.08
CDH3-205ENST00000566808 SP3Q02447 781 aa21.79■■□□□ 1.08
CDH3-205ENST00000566808 KIAA0825Q8IV33 1275 aa21.79■■□□□ 1.08
CDH3-205ENST00000566808 MYD88Q99836 296 aa21.79■■□□□ 1.08
CDH3-205ENST00000566808 BSDC1Q9NW68 430 aaPredicted RBP21.79■■□□□ 1.08
CDH3-205ENST00000566808 A0A0C4DFX4 3053 aa21.78■■□□□ 1.08
CDH3-205ENST00000566808 CTSWP56202 376 aa21.78■■□□□ 1.08
CDH3-205ENST00000566808 MINPP1Q9UNW1 487 aa21.78■■□□□ 1.08
CDH3-205ENST00000566808 SLC9C1Q4G0N8 1177 aa21.77■■□□□ 1.08
CDH3-205ENST00000566808 DUSP27Q5VZP5 1158 aa21.77■■□□□ 1.08
CDH3-205ENST00000566808 TTLL5Q6EMB2 1281 aa21.77■■□□□ 1.08
CDH3-205ENST00000566808 NBPF11Q86T75 865 aa21.76■■□□□ 1.07
CDH3-205ENST00000566808 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.76■■□□□ 1.07
CDH3-205ENST00000566808 ZNF804BA4D1E1 1349 aa21.76■■□□□ 1.07
CDH3-205ENST00000566808 H0YGN5 161 aa21.75■■□□□ 1.07
CDH3-205ENST00000566808 CAP1Q01518 475 aa21.75■■□□□ 1.07
CDH3-205ENST00000566808 ARHGEF6Q15052 776 aa21.75■■□□□ 1.07
CDH3-205ENST00000566808 OTUD5Q96G74 571 aa21.75■■□□□ 1.07
CDH3-205ENST00000566808 LEMD3Q9Y2U8 911 aa21.75■■□□□ 1.07
CDH3-205ENST00000566808 TESPA1A2RU30 521 aaPredicted RBP21.74■■□□□ 1.07
CDH3-205ENST00000566808 IREB2P48200 963 aaKnown RBP21.74■■□□□ 1.07
CDH3-205ENST00000566808 DLGAP5Q15398 846 aa21.74■■□□□ 1.07
CDH3-205ENST00000566808 NEUROD2Q15784 382 aa21.74■■□□□ 1.07
CDH3-205ENST00000566808 SUPT20HL1Q3ZLR7 823 aa21.74■■□□□ 1.07
CDH3-205ENST00000566808 TXNRD3Q86VQ6 643 aa21.74■■□□□ 1.07
CDH3-205ENST00000566808 MTMR14Q8NCE2 650 aa21.74■■□□□ 1.07
CDH3-205ENST00000566808 JARID2Q92833 1246 aaPredicted RBP21.74■■□□□ 1.07
CDH3-205ENST00000566808 COL6A3P12111 3177 aa21.73■■□□□ 1.07
CDH3-205ENST00000566808 GJA5P36382 358 aa21.73■■□□□ 1.07
CDH3-205ENST00000566808 SLC4A8Q2Y0W8 1093 aa21.73■■□□□ 1.07
CDH3-205ENST00000566808 PHAXQ9H814 394 aaKnown RBP21.73■■□□□ 1.07
CDH3-205ENST00000566808 TRIM35Q9UPQ4 493 aa21.73■■□□□ 1.07
CDH3-205ENST00000566808 PTCH2Q9Y6C5 1203 aa21.73■■□□□ 1.07
CDH3-205ENST00000566808 A0A1B0GUL6 1792 aa21.73■■□□□ 1.07
CDH3-205ENST00000566808 GTF2IP78347 998 aa21.72■■□□□ 1.07
CDH3-205ENST00000566808 ANKRD13AQ8IZ07 590 aa21.72■■□□□ 1.07
CDH3-205ENST00000566808 TTLL11Q8NHH1 800 aa21.72■■□□□ 1.07
CDH3-205ENST00000566808 PTPN18Q99952 460 aa21.72■■□□□ 1.07
CDH3-205ENST00000566808 GREM2Q9H772 168 aa21.72■■□□□ 1.07
CDH3-205ENST00000566808 MYO1BO43795 1136 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms