RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 KCNQ5Q9NR82 932 aa12.81□□□□□ -0.36
GTF3C1-206ENST00000566779 ABT1Q9ULW3 272 aaKnown RBP12.81□□□□□ -0.36
GTF3C1-206ENST00000566779 ANKRD18BA2A2Z9 1011 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 FMR1Q06787 632 aaKnown RBP eCLIP12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 GRM1Q13255 1194 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 BEND3Q5T5X7 828 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 DIEXFQ68CQ4 756 aaKnown RBP12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 DNAJC5GQ8N7S2 189 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 TRPM4Q8TD43 1214 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 ZNF408Q9H9D4 720 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 ADARB2Q9NS39 739 aaKnown RBP12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 SMC4Q9NTJ3 1288 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 RTL9Q8NET4 1388 aa12.8□□□□□ -0.36
GTF3C1-206ENST00000566779 ZNF646O15015 1829 aaPredicted RBP12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 WTIPA6NIX2 430 aaPredicted RBP12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 H7C1D1 291 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 GRM8O00222 908 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 TRAF5O00463 557 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 ATP2B4P23634 1241 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 CASP7P55210 303 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 SLFN5Q08AF3 891 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 TBC1D10BQ4KMP7 808 aaPredicted RBP12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 USP50Q70EL3 339 aaPredicted RBP12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 MRPL50Q8N5N7 158 aaKnown RBP12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 SSH1Q8WYL5 1049 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 CNOT7Q9UIV1 285 aaKnown RBP12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 PASKQ96RG2 1323 aa12.79□□□□□ -0.36
GTF3C1-206ENST00000566779 MYH13Q9UKX3 1938 aa12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 TMEM88BA6NKF7 163 aa12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 PLIN1O60240 522 aa12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 IFIT5Q13325 482 aaKnown RBP12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 LMBR1LQ6UX01 489 aa12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 SAMD7Q7Z3H4 446 aa12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 HELBQ8NG08 1087 aaPredicted RBP12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 BSDC1Q9NW68 430 aaPredicted RBP12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 PODXL2Q9NZ53 605 aa12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 MINPP1Q9UNW1 487 aa12.78□□□□□ -0.36
GTF3C1-206ENST00000566779 ITGBL1O95965 494 aaPredicted RBP12.77□□□□□ -0.37
GTF3C1-206ENST00000566779 KLRK1P26718 216 aa12.77□□□□□ -0.37
GTF3C1-206ENST00000566779 CCT4P50991 539 aaKnown RBP12.77□□□□□ -0.37
GTF3C1-206ENST00000566779 EPHA10Q5JZY3 1008 aa12.77□□□□□ -0.37
GTF3C1-206ENST00000566779 ZNF594Q96JF6 807 aaPredicted RBP12.77□□□□□ -0.37
GTF3C1-206ENST00000566779 PLA2G12BQ9BX93 195 aa12.77□□□□□ -0.37
GTF3C1-206ENST00000566779 GLIS2Q9BZE0 524 aaPredicted RBP12.77□□□□□ -0.37
GTF3C1-206ENST00000566779 TAF5LO75529 589 aa12.76□□□□□ -0.37
GTF3C1-206ENST00000566779 ALDH1L1O75891 902 aa12.76□□□□□ -0.37
GTF3C1-206ENST00000566779 FOXO4P98177 505 aa12.76□□□□□ -0.37
GTF3C1-206ENST00000566779 CCDC57Q2TAC2 916 aa12.76□□□□□ -0.37
GTF3C1-206ENST00000566779 SUCLG2Q96I99 432 aa12.76□□□□□ -0.37
GTF3C1-206ENST00000566779 MED23Q9ULK4 1368 aa12.76□□□□□ -0.37
GTF3C1-206ENST00000566779 ZNF804BA4D1E1 1349 aa12.75□□□□□ -0.37
GTF3C1-206ENST00000566779 EGFRP00533 1210 aa12.75□□□□□ -0.37
GTF3C1-206ENST00000566779 CHRNDQ07001 517 aa12.75□□□□□ -0.37
GTF3C1-206ENST00000566779 PDAP1Q13442 181 aaKnown RBP12.75□□□□□ -0.37
GTF3C1-206ENST00000566779 KIF4BQ2VIQ3 1234 aa12.75□□□□□ -0.37
GTF3C1-206ENST00000566779 ANKRD2Q9GZV1 360 aa12.75□□□□□ -0.37
GTF3C1-206ENST00000566779 CNNM1Q9NRU3 951 aa12.75□□□□□ -0.37
GTF3C1-206ENST00000566779 CNTNAP1P78357 1384 aa12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 PTPRCP08575 1304 aa12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 SNAP23O00161 211 aa12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 CELF2O95319 508 aaKnown RBP12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 CSF1RP07333 972 aa12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 NBPF7P0C2Y1 421 aaPredicted RBP12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 HSPA1AP0DMV8 641 aaKnown RBP12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 HSPA1BP0DMV9 641 aaKnown RBP12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 HIRAP54198 1017 aaPredicted RBP12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 HNRNPUQ00839 825 aaKnown RBP eCLIP12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 TXNRD3Q86VQ6 643 aa12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 MXD3Q9BW11 206 aa12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 ECM29Q5VYK3 1845 aa12.74□□□□□ -0.37
GTF3C1-206ENST00000566779 USP17L3A6NCW0 530 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 USP17L4A6NCW7 530 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 PRKAR2AP13861 404 aaKnown RBP12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 RPS12P25398 132 aaKnown RBP12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 RSBN1LQ6PCB5 846 aaPredicted RBP12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 DLK2Q6UY11 383 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 USP17L1Q7RTZ2 530 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 USP48Q86UV5 1035 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 JMYQ8N9B5 988 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 GGA3Q9NZ52 723 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 PCDHB8Q9UN66 801 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 JAG2Q9Y219 1238 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 PCDHB13Q9Y5F0 798 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 ARAP2Q8WZ64 1704 aa12.73□□□□□ -0.37
GTF3C1-206ENST00000566779 ASTN2O75129 1339 aaPredicted RBP12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 ADM5C9JUS6 153 aa12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 VIL1P09327 827 aaKnown RBP12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 VEGFBP49765 207 aa12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 LDHAL6AQ6ZMR3 332 aa12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 KRT26Q7Z3Y9 468 aa12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 DPF2Q92785 391 aa12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 DCPSQ96C86 337 aaKnown RBP12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 BICC1Q9H694 974 aaKnown RBP12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 LEMD3Q9Y2U8 911 aa12.72□□□□□ -0.37
GTF3C1-206ENST00000566779 DEFB115Q30KQ5 88 aa12.71□□□□□ -0.37
GTF3C1-206ENST00000566779 ALDH1L2Q3SY69 923 aa12.71□□□□□ -0.37
GTF3C1-206ENST00000566779 COA1Q9GZY4 146 aa12.71□□□□□ -0.37
GTF3C1-206ENST00000566779 NOB1Q9ULX3 412 aaKnown RBP12.71□□□□□ -0.37
GTF3C1-206ENST00000566779 SCAF8Q9UPN6 1271 aaKnown RBP12.71□□□□□ -0.37
GTF3C1-206ENST00000566779 SASH1O94885 1247 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms