RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ANKRD2Q9GZV1 360 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 TAF1DQ9H5J8 278 aaPredicted RBP12.34□□□□□ -0.43
CLN3-220ENST00000566040 ZBTB40Q9NUA8 1239 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 COG6Q9Y2V7 657 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 ZBTB12Q9Y330 459 aaPredicted RBP12.34□□□□□ -0.43
CLN3-220ENST00000566040 DOCK2Q92608 1830 aa12.34□□□□□ -0.43
CLN3-220ENST00000566040 PAPPA2Q9BXP8 1791 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 GNAI2P04899 355 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 VIL1P09327 827 aaKnown RBP12.33□□□□□ -0.44
CLN3-220ENST00000566040 HIRAP54198 1017 aaPredicted RBP12.33□□□□□ -0.44
CLN3-220ENST00000566040 DACT2Q5SW24 774 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 CIAPIN1Q6FI81 312 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 CEP85Q6P2H3 762 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 CERS5Q8N5B7 392 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 EYA3Q99504 573 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 CNNM1Q9NRU3 951 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 GPRC5DQ9NZD1 345 aa12.33□□□□□ -0.44
CLN3-220ENST00000566040 CDK5RAP2Q96SN8 1893 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 SRGAP3O43295 1099 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 CIAO1O76071 339 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 SASH1O94885 1247 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 PDE8BO95263 885 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 IL1R1P14778 569 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 VEGFAP15692 232 aaPredicted RBP12.32□□□□□ -0.44
CLN3-220ENST00000566040 RRP1P56182 461 aaKnown RBP12.32□□□□□ -0.44
CLN3-220ENST00000566040 EIF6P56537 245 aaKnown RBP12.32□□□□□ -0.44
CLN3-220ENST00000566040 C1QTNF8P60827 252 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 PDE3AQ14432 1141 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 FTSJ3Q8IY81 847 aaKnown RBP12.32□□□□□ -0.44
CLN3-220ENST00000566040 TRPM4Q8TD43 1214 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 FAM84BQ96KN1 310 aaPredicted RBP12.32□□□□□ -0.44
CLN3-220ENST00000566040 ZC3H12CQ9C0D7 883 aaKnown RBP12.32□□□□□ -0.44
CLN3-220ENST00000566040 SIL1Q9H173 461 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 GJA3Q9Y6H8 435 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 MAST2Q6P0Q8 1798 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 MROH5Q6ZUA9 1318 aa12.32□□□□□ -0.44
CLN3-220ENST00000566040 GYG1P46976 350 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 ATP8B2P98198 1209 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 UBE4AQ14139 1066 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 DPY19L2Q6NUT2 758 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 FBXO33Q7Z6M2 555 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 RBM46Q8TBY0 533 aaKnown RBP12.31□□□□□ -0.44
CLN3-220ENST00000566040 COA1Q9GZY4 146 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 TMX4Q9H1E5 349 aaPredicted RBP12.31□□□□□ -0.44
CLN3-220ENST00000566040 CD209Q9NNX6 404 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 AOX1Q06278 1338 aa12.31□□□□□ -0.44
CLN3-220ENST00000566040 TOMM70O94826 608 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 ADORA1P30542 326 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 EPHX2P34913 555 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 GRIK5Q16478 980 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 TAF7LQ5H9L4 462 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 METTL24Q5JXM2 366 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 PODNQ7Z5L7 613 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 TDRD7Q8NHU6 1098 aaKnown RBP12.3□□□□□ -0.44
CLN3-220ENST00000566040 HACL1Q9UJ83 578 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 FBXO3Q9UK99 471 aa12.3□□□□□ -0.44
CLN3-220ENST00000566040 ASTN2O75129 1339 aaPredicted RBP12.3□□□□□ -0.44
CLN3-220ENST00000566040 MYH2Q9UKX2 1941 aa12.29□□□□□ -0.44
CLN3-220ENST00000566040 ZNF280AP59817 542 aaPredicted RBP12.29□□□□□ -0.44
CLN3-220ENST00000566040 RSBN1LQ6PCB5 846 aaPredicted RBP12.29□□□□□ -0.44
CLN3-220ENST00000566040 NOP58Q9Y2X3 529 aaKnown RBP12.29□□□□□ -0.44
CLN3-220ENST00000566040 FAM205AQ6ZU69 1335 aa12.29□□□□□ -0.44
CLN3-220ENST00000566040 PASKQ96RG2 1323 aa12.29□□□□□ -0.44
CLN3-220ENST00000566040 THSD7BQ9C0I4 1608 aa12.29□□□□□ -0.44
CLN3-220ENST00000566040 OTOFQ9HC10 1997 aa12.29□□□□□ -0.44
CLN3-220ENST00000566040 ITGBL1O95965 494 aaPredicted RBP12.28□□□□□ -0.44
CLN3-220ENST00000566040 FMR1Q06787 632 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLN3-220ENST00000566040 TFCP2Q12800 502 aa12.28□□□□□ -0.44
CLN3-220ENST00000566040 MICALL2Q8IY33 904 aa12.28□□□□□ -0.44
CLN3-220ENST00000566040 DPF2Q92785 391 aa12.28□□□□□ -0.44
CLN3-220ENST00000566040 ZBED3Q96IU2 234 aaPredicted RBP12.28□□□□□ -0.44
CLN3-220ENST00000566040 DDX19BQ9UMR2 479 aa12.28□□□□□ -0.44
CLN3-220ENST00000566040 JAG2Q9Y219 1238 aa12.28□□□□□ -0.44
CLN3-220ENST00000566040 PCDHAC2Q9Y5I4 1007 aa12.28□□□□□ -0.44
CLN3-220ENST00000566040 LAMB1P07942 1786 aa12.28□□□□□ -0.44
CLN3-220ENST00000566040 FOCADQ5VW36 1801 aa12.27□□□□□ -0.44
CLN3-220ENST00000566040 PCNTO95613 3336 aa12.27□□□□□ -0.44
CLN3-220ENST00000566040 IQCA1LA6NCM1 817 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 USP17L3A6NCW0 530 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 USP17L4A6NCW7 530 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 IL15P40933 162 aaPredicted RBP12.27□□□□□ -0.45
CLN3-220ENST00000566040 BCAMP50895 628 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 TNIP1Q15025 636 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 PUM3Q15397 648 aaKnown RBP12.27□□□□□ -0.45
CLN3-220ENST00000566040 STRIP1Q5VSL9 837 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 USP17L1Q7RTZ2 530 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 SAMD7Q7Z3H4 446 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 PGAP2Q9UHJ9 254 aa12.27□□□□□ -0.45
CLN3-220ENST00000566040 CNOT7Q9UIV1 285 aaKnown RBP12.27□□□□□ -0.45
CLN3-220ENST00000566040 ZBTB22O15209 634 aa12.26□□□□□ -0.45
CLN3-220ENST00000566040 RPS12P25398 132 aaKnown RBP12.26□□□□□ -0.45
CLN3-220ENST00000566040 PHKA1P46020 1223 aa12.26□□□□□ -0.45
CLN3-220ENST00000566040 GTF2IP78347 998 aa12.26□□□□□ -0.45
CLN3-220ENST00000566040 ATP2B3Q16720 1220 aa12.26□□□□□ -0.45
CLN3-220ENST00000566040 DLK2Q6UY11 383 aa12.26□□□□□ -0.45
CLN3-220ENST00000566040 LDHDQ86WU2 507 aa12.26□□□□□ -0.45
CLN3-220ENST00000566040 AGBL3Q8NEM8 1001 aa12.26□□□□□ -0.45
CLN3-220ENST00000566040 ADARB2Q9NS39 739 aaKnown RBP12.26□□□□□ -0.45
CLN3-220ENST00000566040 IQSEC3Q9UPP2 1182 aaPredicted RBP12.26□□□□□ -0.45
CLN3-220ENST00000566040 MYH7P12883 1935 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms