RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 C15orf52Q6ZUT6 534 aaKnown RBP18.85■□□□□ 0.61
CLN3-213ENST00000565047 USP17L1Q7RTZ2 530 aa18.85■□□□□ 0.61
CLN3-213ENST00000565047 COA1Q9GZY4 146 aa18.85■□□□□ 0.61
CLN3-213ENST00000565047 C9orf78Q9NZ63 289 aaPredicted RBP18.85■□□□□ 0.61
CLN3-213ENST00000565047 G3V3G9 751 aa18.84■□□□□ 0.61
CLN3-213ENST00000565047 DCAF8Q5TAQ9 597 aa18.84■□□□□ 0.61
CLN3-213ENST00000565047 COL13A1Q5TAT6 717 aaPredicted RBP18.84■□□□□ 0.61
CLN3-213ENST00000565047 IFFO2Q5TF58 517 aa18.84■□□□□ 0.61
CLN3-213ENST00000565047 SAPCD2Q86UD0 394 aa18.84■□□□□ 0.61
CLN3-213ENST00000565047 A0A1B0GUL6 1792 aa18.83■□□□□ 0.61
CLN3-213ENST00000565047 ASTN2O75129 1339 aaPredicted RBP18.83■□□□□ 0.61
CLN3-213ENST00000565047 KIF4BQ2VIQ3 1234 aa18.83■□□□□ 0.6
CLN3-213ENST00000565047 RABL6Q3YEC7 729 aaPredicted RBP18.83■□□□□ 0.6
CLN3-213ENST00000565047 USP48Q86UV5 1035 aa18.83■□□□□ 0.6
CLN3-213ENST00000565047 ZNF594Q96JF6 807 aaPredicted RBP18.83■□□□□ 0.6
CLN3-213ENST00000565047 MXD3Q9BW11 206 aa18.83■□□□□ 0.6
CLN3-213ENST00000565047 ABT1Q9ULW3 272 aaKnown RBP18.83■□□□□ 0.6
CLN3-213ENST00000565047 WDR33Q9C0J8 1336 aaKnown RBP18.82■□□□□ 0.6
CLN3-213ENST00000565047 TAF5LO75529 589 aa18.82■□□□□ 0.6
CLN3-213ENST00000565047 CELF2O95319 508 aaKnown RBP18.82■□□□□ 0.6
CLN3-213ENST00000565047 BRPF1P55201 1214 aaPredicted RBP18.82■□□□□ 0.6
CLN3-213ENST00000565047 RBM26Q5T8P6 1007 aaKnown RBP18.82■□□□□ 0.6
CLN3-213ENST00000565047 STRIP1Q5VSL9 837 aa18.82■□□□□ 0.6
CLN3-213ENST00000565047 ANKRD44Q8N8A2 993 aa18.82■□□□□ 0.6
CLN3-213ENST00000565047 HELBQ8NG08 1087 aaPredicted RBP18.82■□□□□ 0.6
CLN3-213ENST00000565047 USP44Q9H0E7 712 aa18.82■□□□□ 0.6
CLN3-213ENST00000565047 WBP1LQ9NX94 342 aa18.82■□□□□ 0.6
CLN3-213ENST00000565047 THSD7BQ9C0I4 1608 aa18.82■□□□□ 0.6
CLN3-213ENST00000565047 USP17L8P0C7I0 530 aa18.81■□□□□ 0.6
CLN3-213ENST00000565047 CCDC57Q2TAC2 916 aa18.81■□□□□ 0.6
CLN3-213ENST00000565047 CT47B1P0C2W7 299 aaPredicted RBP18.8■□□□□ 0.6
CLN3-213ENST00000565047 LDHAL6AQ6ZMR3 332 aa18.8■□□□□ 0.6
CLN3-213ENST00000565047 HHIPL1Q96JK4 782 aa18.8■□□□□ 0.6
CLN3-213ENST00000565047 BICC1Q9H694 974 aaKnown RBP18.8■□□□□ 0.6
CLN3-213ENST00000565047 CD209Q9NNX6 404 aa18.8■□□□□ 0.6
CLN3-213ENST00000565047 MYOZ2Q9NPC6 264 aa18.8■□□□□ 0.6
CLN3-213ENST00000565047 CHMP3Q9Y3E7 222 aa18.8■□□□□ 0.6
CLN3-213ENST00000565047 POLR2AP24928 1970 aaKnown RBP18.79■□□□□ 0.6
CLN3-213ENST00000565047 ADM5C9JUS6 153 aa18.79■□□□□ 0.6
CLN3-213ENST00000565047 SCARF1Q14162 830 aa18.79■□□□□ 0.6
CLN3-213ENST00000565047 CYP4F22Q6NT55 531 aa18.79■□□□□ 0.6
CLN3-213ENST00000565047 KRT26Q7Z3Y9 468 aa18.79■□□□□ 0.6
CLN3-213ENST00000565047 PUS3Q9BZE2 481 aaKnown RBP18.79■□□□□ 0.6
CLN3-213ENST00000565047 RIPOR2Q9Y4F9 1068 aa18.79■□□□□ 0.6
CLN3-213ENST00000565047 FOXN1O15353 648 aa18.78■□□□□ 0.6
CLN3-213ENST00000565047 IL1R1P14778 569 aa18.78■□□□□ 0.6
CLN3-213ENST00000565047 TTLL5Q6EMB2 1281 aa18.78■□□□□ 0.6
CLN3-213ENST00000565047 CAPNS2Q96L46 248 aa18.78■□□□□ 0.6
CLN3-213ENST00000565047 GGA3Q9NZ52 723 aa18.78■□□□□ 0.6
CLN3-213ENST00000565047 MIER1Q8N108 512 aa18.77■□□□□ 0.6
CLN3-213ENST00000565047 DCPSQ96C86 337 aaKnown RBP18.77■□□□□ 0.6
CLN3-213ENST00000565047 SMC4Q9NTJ3 1288 aa18.77■□□□□ 0.6
CLN3-213ENST00000565047 MYO3BQ8WXR4 1341 aa18.76■□□□□ 0.59
CLN3-213ENST00000565047 RARSP54136 660 aaKnown RBP18.76■□□□□ 0.59
CLN3-213ENST00000565047 GTF2IP78347 998 aa18.76■□□□□ 0.59
CLN3-213ENST00000565047 ANGEL2Q5VTE6 544 aaKnown RBP18.76■□□□□ 0.59
CLN3-213ENST00000565047 CERS5Q8N5B7 392 aa18.76■□□□□ 0.59
CLN3-213ENST00000565047 ZBED3Q96IU2 234 aaPredicted RBP18.76■□□□□ 0.59
CLN3-213ENST00000565047 NOB1Q9ULX3 412 aaKnown RBP18.76■□□□□ 0.59
CLN3-213ENST00000565047 PITPNM2Q9BZ72 1349 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 WNT10BO00744 389 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 ECE1P42892 770 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 KCNJ4P48050 445 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 MMP14P50281 582 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 NBPF9Q3BBW0 867 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 ZNF408Q9H9D4 720 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 CNNM1Q9NRU3 951 aa18.75■□□□□ 0.59
CLN3-213ENST00000565047 MAP2K2P36507 400 aa18.74■□□□□ 0.59
CLN3-213ENST00000565047 RFX5P48382 616 aaPredicted RBP18.74■□□□□ 0.59
CLN3-213ENST00000565047 UBE4AQ14139 1066 aa18.74■□□□□ 0.59
CLN3-213ENST00000565047 VGLL2Q8N8G2 317 aa18.74■□□□□ 0.59
CLN3-213ENST00000565047 AOC2O75106 756 aa18.73■□□□□ 0.59
CLN3-213ENST00000565047 MAP2K1Q02750 393 aaPredicted RBP18.73■□□□□ 0.59
CLN3-213ENST00000565047 LRRC24Q50LG9 513 aa18.73■□□□□ 0.59
CLN3-213ENST00000565047 TAF7LQ5H9L4 462 aa18.73■□□□□ 0.59
CLN3-213ENST00000565047 SULF1Q8IWU6 871 aa18.73■□□□□ 0.59
CLN3-213ENST00000565047 CDCA5Q96FF9 252 aa18.73■□□□□ 0.59
CLN3-213ENST00000565047 FAM84BQ96KN1 310 aaPredicted RBP18.73■□□□□ 0.59
CLN3-213ENST00000565047 PLIN1O60240 522 aa18.72■□□□□ 0.59
CLN3-213ENST00000565047 FKBP1AP62942 108 aaKnown RBP18.72■□□□□ 0.59
CLN3-213ENST00000565047 KIAA0825Q8IV33 1275 aa18.72■□□□□ 0.59
CLN3-213ENST00000565047 TDRD7Q8NHU6 1098 aaKnown RBP18.72■□□□□ 0.59
CLN3-213ENST00000565047 GBA2Q9HCG7 927 aaPredicted RBP18.72■□□□□ 0.59
CLN3-213ENST00000565047 FAM155AB1AL88 458 aaPredicted RBP18.71■□□□□ 0.59
CLN3-213ENST00000565047 SASH1O94885 1247 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 DIEXFQ68CQ4 756 aaKnown RBP18.71■□□□□ 0.59
CLN3-213ENST00000565047 ZNF804AQ7Z570 1209 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 OGFOD1Q8N543 542 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 KLHDC4Q8TBB5 520 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 ARHGAP45Q92619 1136 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 FBXW7Q969H0 707 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 PRDM10Q9NQV6 1147 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 SCAF8Q9UPN6 1271 aaKnown RBP18.71■□□□□ 0.59
CLN3-213ENST00000565047 FAM205AQ6ZU69 1335 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 MROH5Q6ZUA9 1318 aa18.71■□□□□ 0.59
CLN3-213ENST00000565047 CTCFP49711 727 aaPredicted RBP18.7■□□□□ 0.58
CLN3-213ENST00000565047 HUNKP57058 714 aa18.7■□□□□ 0.58
CLN3-213ENST00000565047 MTMR14Q8NCE2 650 aa18.7■□□□□ 0.58
CLN3-213ENST00000565047 ZIC5Q96T25 663 aa18.7■□□□□ 0.58
CLN3-213ENST00000565047 PDE8BO95263 885 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms