RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 LEMD3Q9Y2U8 911 aa17.19■□□□□ 0.34
VPS9D1-204ENST00000565023 EGFRP00533 1210 aa17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 VIL1P09327 827 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 RPS12P25398 132 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 RSBN1LQ6PCB5 846 aaPredicted RBP17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 LDHAL6AQ6ZMR3 332 aa17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 PAXIP1Q6ZW49 1069 aaPredicted RBP17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 MXD3Q9BW11 206 aa17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 BICC1Q9H694 974 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-204ENST00000565023 USP17L3A6NCW0 530 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 USP17L4A6NCW7 530 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 GRM1Q13255 1194 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 KIF4BQ2VIQ3 1234 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 DLK2Q6UY11 383 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 USP17L1Q7RTZ2 530 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 PODNQ7Z5L7 613 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 KAZALD1Q96I82 304 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 NOB1Q9ULX3 412 aaKnown RBP17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 ZBED9Q6R2W3 1325 aa17.17■□□□□ 0.34
VPS9D1-204ENST00000565023 USP48Q86UV5 1035 aa17.16■□□□□ 0.34
VPS9D1-204ENST00000565023 CNTNAP1P78357 1384 aa17.15■□□□□ 0.34
VPS9D1-204ENST00000565023 CELF2O95319 508 aaKnown RBP17.15■□□□□ 0.34
VPS9D1-204ENST00000565023 PUS3Q9BZE2 481 aaKnown RBP17.15■□□□□ 0.34
VPS9D1-204ENST00000565023 COA1Q9GZY4 146 aa17.15■□□□□ 0.34
VPS9D1-204ENST00000565023 CT47B1P0C2W7 299 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 VEGFBP49765 207 aa17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 DEFB115Q30KQ5 88 aa17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 AGBL3Q8NEM8 1001 aa17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 PCDH10Q9P2E7 1040 aa17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 UTYO14607 1347 aa17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 ASTN2O75129 1339 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 ZNF646O15015 1829 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-204ENST00000565023 ADM5C9JUS6 153 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 USP17L8P0C7I0 530 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 RARSP54136 660 aaKnown RBP17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 GTF2IP78347 998 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 CST9Q5W186 159 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 CDC37L1Q7L3B6 337 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 ANKRD44Q8N8A2 993 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 ZC3H15Q8WU90 426 aaKnown RBP17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 DCPSQ96C86 337 aaKnown RBP17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 USP44Q9H0E7 712 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 GGA3Q9NZ52 723 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 JAG2Q9Y219 1238 aa17.13■□□□□ 0.33
VPS9D1-204ENST00000565023 DACT2Q5SW24 774 aa17.12■□□□□ 0.33
VPS9D1-204ENST00000565023 KRT26Q7Z3Y9 468 aa17.12■□□□□ 0.33
VPS9D1-204ENST00000565023 KLHDC4Q8TBB5 520 aa17.12■□□□□ 0.33
VPS9D1-204ENST00000565023 API5Q9BZZ5 524 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-204ENST00000565023 CD209Q9NNX6 404 aa17.12■□□□□ 0.33
VPS9D1-204ENST00000565023 PGAP2Q9UHJ9 254 aa17.12■□□□□ 0.33
VPS9D1-204ENST00000565023 TTLL5Q6EMB2 1281 aa17.11■□□□□ 0.33
VPS9D1-204ENST00000565023 GMLQ99445 158 aa17.11■□□□□ 0.33
VPS9D1-204ENST00000565023 MYOZ2Q9NPC6 264 aa17.11■□□□□ 0.33
VPS9D1-204ENST00000565023 SCAF8Q9UPN6 1271 aaKnown RBP17.11■□□□□ 0.33
VPS9D1-204ENST00000565023 RASSF10A6NK89 507 aa17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 SCARF1Q14162 830 aa17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 RABL6Q3YEC7 729 aaPredicted RBP17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 LRRC24Q50LG9 513 aa17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 STRIP1Q5VSL9 837 aa17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 ANGEL2Q5VTE6 544 aaKnown RBP17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 CYP4F22Q6NT55 531 aa17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 ZNF804AQ7Z570 1209 aa17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 KIAA0825Q8IV33 1275 aa17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 FRAT1Q92837 279 aaPredicted RBP17.1■□□□□ 0.33
VPS9D1-204ENST00000565023 UBTFL1P0CB47 393 aaPredicted RBP17.09■□□□□ 0.33
VPS9D1-204ENST00000565023 ZNF280AP59817 542 aaPredicted RBP17.09■□□□□ 0.33
VPS9D1-204ENST00000565023 METTL24Q5JXM2 366 aa17.09■□□□□ 0.33
VPS9D1-204ENST00000565023 SULF1Q8IWU6 871 aa17.09■□□□□ 0.33
VPS9D1-204ENST00000565023 TNNQ9UQP3 1299 aa17.09■□□□□ 0.33
VPS9D1-204ENST00000565023 WDR33Q9C0J8 1336 aaKnown RBP17.09■□□□□ 0.33
VPS9D1-204ENST00000565023 KIF16BQ96L93 1317 aa17.08■□□□□ 0.32
VPS9D1-204ENST00000565023 IRS2Q9Y4H2 1338 aa17.08■□□□□ 0.32
VPS9D1-204ENST00000565023 F8W031 263 aaPredicted RBP17.08■□□□□ 0.32
VPS9D1-204ENST00000565023 BCAR3O75815 825 aa17.08■□□□□ 0.32
VPS9D1-204ENST00000565023 GYG1P46976 350 aa17.08■□□□□ 0.32
VPS9D1-204ENST00000565023 OGFOD1Q8N543 542 aa17.08■□□□□ 0.32
VPS9D1-204ENST00000565023 TLL2Q9Y6L7 1015 aa17.08■□□□□ 0.32
VPS9D1-204ENST00000565023 ZNF609O15014 1411 aa17.07■□□□□ 0.32
VPS9D1-204ENST00000565023 MYO3BQ8WXR4 1341 aa17.07■□□□□ 0.32
VPS9D1-204ENST00000565023 SASH1O94885 1247 aa17.07■□□□□ 0.32
VPS9D1-204ENST00000565023 NBPF9Q3BBW0 867 aa17.07■□□□□ 0.32
VPS9D1-204ENST00000565023 CAPNS2Q96L46 248 aa17.07■□□□□ 0.32
VPS9D1-204ENST00000565023 RIPOR2Q9Y4F9 1068 aa17.07■□□□□ 0.32
VPS9D1-204ENST00000565023 MROH5Q6ZUA9 1318 aa17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 BRPF1P55201 1214 aaPredicted RBP17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 C15orf52Q6ZUT6 534 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 CLUAP1Q96AJ1 413 aa17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 MEIS3Q99687 375 aa17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 HDAC9Q9UKV0 1011 aa17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 IQSEC3Q9UPP2 1182 aaPredicted RBP17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 LRRFIP2Q9Y608 721 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-204ENST00000565023 AOC2O75106 756 aa17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 ECE1P42892 770 aa17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 UBE4AQ14139 1066 aa17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 SAPCD2Q86UD0 394 aa17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 CERS5Q8N5B7 392 aa17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 AIDAQ96BJ3 306 aa17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 SIL1Q9H173 461 aa17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 GBA2Q9HCG7 927 aaPredicted RBP17.05■□□□□ 0.32
VPS9D1-204ENST00000565023 IL1R1P14778 569 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms