RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 USP17L1Q7RTZ2 530 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 SAPCD2Q86UD0 394 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 AGBL3Q8NEM8 1001 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 MXD3Q9BW11 206 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 SRCIN1Q9C0H9 1055 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 ANKRD2Q9GZV1 360 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 ZNF408Q9H9D4 720 aa13.74□□□□□ -0.21
VPS39-208ENST00000564994 IRS2Q9Y4H2 1338 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 ADM5C9JUS6 153 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 SNAP23O00161 211 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 IFIT5Q13325 482 aaKnown RBP13.73□□□□□ -0.21
VPS39-208ENST00000564994 DACT2Q5SW24 774 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 SSH1Q8WYL5 1049 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 KAZALD1Q96I82 304 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 CAPNS2Q96L46 248 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 WBP1LQ9NX94 342 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 CHMP3Q9Y3E7 222 aa13.73□□□□□ -0.21
VPS39-208ENST00000564994 TAF5LO75529 589 aa13.72□□□□□ -0.21
VPS39-208ENST00000564994 NBPF7P0C2Y1 421 aaPredicted RBP13.72□□□□□ -0.21
VPS39-208ENST00000564994 PAXIP1Q6ZW49 1069 aaPredicted RBP13.72□□□□□ -0.21
VPS39-208ENST00000564994 KRT26Q7Z3Y9 468 aa13.72□□□□□ -0.21
VPS39-208ENST00000564994 HELBQ8NG08 1087 aaPredicted RBP13.72□□□□□ -0.21
VPS39-208ENST00000564994 SUCLG2Q96I99 432 aa13.72□□□□□ -0.21
VPS39-208ENST00000564994 ZNF594Q96JF6 807 aaPredicted RBP13.72□□□□□ -0.21
VPS39-208ENST00000564994 COA1Q9GZY4 146 aa13.72□□□□□ -0.21
VPS39-208ENST00000564994 C9orf78Q9NZ63 289 aaPredicted RBP13.72□□□□□ -0.21
VPS39-208ENST00000564994 CCER2I3L3R5 266 aa13.71□□□□□ -0.21
VPS39-208ENST00000564994 USP17L8P0C7I0 530 aa13.71□□□□□ -0.21
VPS39-208ENST00000564994 GRM1Q13255 1194 aa13.71□□□□□ -0.21
VPS39-208ENST00000564994 TRMT2AQ8IZ69 625 aaKnown RBP13.71□□□□□ -0.21
VPS39-208ENST00000564994 DCPSQ96C86 337 aaKnown RBP13.71□□□□□ -0.21
VPS39-208ENST00000564994 MYOZ2Q9NPC6 264 aa13.71□□□□□ -0.21
VPS39-208ENST00000564994 GGA3Q9NZ52 723 aa13.71□□□□□ -0.21
VPS39-208ENST00000564994 UTYO14607 1347 aa13.7□□□□□ -0.22
VPS39-208ENST00000564994 ECE1P42892 770 aa13.7□□□□□ -0.22
VPS39-208ENST00000564994 SCARF1Q14162 830 aa13.7□□□□□ -0.22
VPS39-208ENST00000564994 CCDC57Q2TAC2 916 aa13.7□□□□□ -0.22
VPS39-208ENST00000564994 STRIP1Q5VSL9 837 aa13.7□□□□□ -0.22
VPS39-208ENST00000564994 PTPRCP08575 1304 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 AOC2O75106 756 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 KCNJ4P48050 445 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 ANGEL2Q5VTE6 544 aaKnown RBP13.69□□□□□ -0.22
VPS39-208ENST00000564994 TNS4Q8IZW8 715 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 FBXW7Q969H0 707 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 AIDAQ96BJ3 306 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 HHIPL1Q96JK4 782 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 CD209Q9NNX6 404 aa13.69□□□□□ -0.22
VPS39-208ENST00000564994 CTCFP49711 727 aaPredicted RBP13.68□□□□□ -0.22
VPS39-208ENST00000564994 GTF2IP78347 998 aa13.68□□□□□ -0.22
VPS39-208ENST00000564994 MAP2K1Q02750 393 aaPredicted RBP13.68□□□□□ -0.22
VPS39-208ENST00000564994 TTLL5Q6EMB2 1281 aa13.68□□□□□ -0.22
VPS39-208ENST00000564994 LDHAL6AQ6ZMR3 332 aa13.68□□□□□ -0.22
VPS39-208ENST00000564994 C15orf52Q6ZUT6 534 aaKnown RBP13.68□□□□□ -0.22
VPS39-208ENST00000564994 SULF1Q8IWU6 871 aa13.68□□□□□ -0.22
VPS39-208ENST00000564994 PUS3Q9BZE2 481 aaKnown RBP13.68□□□□□ -0.22
VPS39-208ENST00000564994 BICC1Q9H694 974 aaKnown RBP13.68□□□□□ -0.22
VPS39-208ENST00000564994 SCAF8Q9UPN6 1271 aaKnown RBP13.68□□□□□ -0.22
VPS39-208ENST00000564994 MYO3BQ8WXR4 1341 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 PLIN1O60240 522 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 HSPA8P11142 646 aaKnown RBP13.67□□□□□ -0.22
VPS39-208ENST00000564994 LBX1P52954 281 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 HUNKP57058 714 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 NBPF9Q3BBW0 867 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 ALDH1L2Q3SY69 923 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 RABL6Q3YEC7 729 aaPredicted RBP13.67□□□□□ -0.22
VPS39-208ENST00000564994 TAF7LQ5H9L4 462 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 ANKRD44Q8N8A2 993 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 CDCA5Q96FF9 252 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 GBA2Q9HCG7 927 aaPredicted RBP13.67□□□□□ -0.22
VPS39-208ENST00000564994 PRDM10Q9NQV6 1147 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 CNNM1Q9NRU3 951 aa13.67□□□□□ -0.22
VPS39-208ENST00000564994 MAP2K2P36507 400 aa13.66□□□□□ -0.22
VPS39-208ENST00000564994 KIAA0825Q8IV33 1275 aa13.66□□□□□ -0.22
VPS39-208ENST00000564994 CERS5Q8N5B7 392 aa13.66□□□□□ -0.22
VPS39-208ENST00000564994 ZIC5Q96T25 663 aa13.66□□□□□ -0.22
VPS39-208ENST00000564994 USP44Q9H0E7 712 aa13.66□□□□□ -0.22
VPS39-208ENST00000564994 SMC4Q9NTJ3 1288 aa13.66□□□□□ -0.22
VPS39-208ENST00000564994 ECM29Q5VYK3 1845 aa13.66□□□□□ -0.22
VPS39-208ENST00000564994 PITPNM2Q9BZ72 1349 aa13.65□□□□□ -0.22
VPS39-208ENST00000564994 WNT10BO00744 389 aa13.65□□□□□ -0.22
VPS39-208ENST00000564994 SASH1O94885 1247 aa13.65□□□□□ -0.22
VPS39-208ENST00000564994 IL1R1P14778 569 aa13.65□□□□□ -0.22
VPS39-208ENST00000564994 OGFOD1Q8N543 542 aa13.65□□□□□ -0.22
VPS39-208ENST00000564994 RIPOR2Q9Y4F9 1068 aa13.65□□□□□ -0.22
VPS39-208ENST00000564994 FAM155AB1AL88 458 aaPredicted RBP13.64□□□□□ -0.23
VPS39-208ENST00000564994 RGMBQ6NW40 437 aa13.64□□□□□ -0.23
VPS39-208ENST00000564994 ZNF804AQ7Z570 1209 aa13.64□□□□□ -0.23
VPS39-208ENST00000564994 C2orf69Q8N8R5 385 aa13.64□□□□□ -0.23
VPS39-208ENST00000564994 JAG2Q9Y219 1238 aa13.64□□□□□ -0.23
VPS39-208ENST00000564994 PAPPA2Q9BXP8 1791 aa13.63□□□□□ -0.23
VPS39-208ENST00000564994 UBE4AQ14139 1066 aa13.63□□□□□ -0.23
VPS39-208ENST00000564994 LRRC24Q50LG9 513 aa13.63□□□□□ -0.23
VPS39-208ENST00000564994 PRAMEF18Q5VWM3 479 aa13.63□□□□□ -0.23
VPS39-208ENST00000564994 KLHDC4Q8TBB5 520 aa13.63□□□□□ -0.23
VPS39-208ENST00000564994 ZBED3Q96IU2 234 aaPredicted RBP13.63□□□□□ -0.23
VPS39-208ENST00000564994 TSKSQ9UJT2 592 aa13.63□□□□□ -0.23
VPS39-208ENST00000564994 NOB1Q9ULX3 412 aaKnown RBP13.63□□□□□ -0.23
VPS39-208ENST00000564994 ARAP2Q8WZ64 1704 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 CASP8AP2Q9UKL3 1982 aa13.62□□□□□ -0.23
VPS39-208ENST00000564994 CT47B1P0C2W7 299 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 710.9 ms