RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GNAI3P08754 354 aa16.77■□□□□ 0.28
CLK3-216ENST00000564468 VIL1P09327 827 aaKnown RBP16.77■□□□□ 0.28
CLK3-216ENST00000564468 POTEIP0CG38 1075 aa16.77■□□□□ 0.28
CLK3-216ENST00000564468 POTEJP0CG39 1038 aa16.77■□□□□ 0.28
CLK3-216ENST00000564468 ANKRD44Q8N8A2 993 aa16.77■□□□□ 0.28
CLK3-216ENST00000564468 CNOT7Q9UIV1 285 aaKnown RBP16.77■□□□□ 0.28
CLK3-216ENST00000564468 TRIM27P14373 513 aa16.76■□□□□ 0.27
CLK3-216ENST00000564468 VEGFBP49765 207 aa16.76■□□□□ 0.27
CLK3-216ENST00000564468 C15orf52Q6ZUT6 534 aaKnown RBP16.76■□□□□ 0.27
CLK3-216ENST00000564468 POLR2AP24928 1970 aaKnown RBP16.76■□□□□ 0.27
CLK3-216ENST00000564468 MROH5Q6ZUA9 1318 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 USP17L3A6NCW0 530 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 USP17L4A6NCW7 530 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 PLIN1O60240 522 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 TAF5LO75529 589 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 USP17L1Q7RTZ2 530 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 AGBL3Q8NEM8 1001 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 HELBQ8NG08 1087 aaPredicted RBP16.75■□□□□ 0.27
CLK3-216ENST00000564468 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
CLK3-216ENST00000564468 TRPM7Q96QT4 1865 aa16.75■□□□□ 0.27
CLK3-216ENST00000564468 ZNF609O15014 1411 aa16.74■□□□□ 0.27
CLK3-216ENST00000564468 MAP2K1Q02750 393 aaPredicted RBP16.74■□□□□ 0.27
CLK3-216ENST00000564468 UBE4AQ14139 1066 aa16.74■□□□□ 0.27
CLK3-216ENST00000564468 RSBN1LQ6PCB5 846 aaPredicted RBP16.74■□□□□ 0.27
CLK3-216ENST00000564468 MICALL2Q8IY33 904 aa16.74■□□□□ 0.27
CLK3-216ENST00000564468 ZC3H15Q8WU90 426 aaKnown RBP16.74■□□□□ 0.27
CLK3-216ENST00000564468 KCNQ5Q9NR82 932 aa16.74■□□□□ 0.27
CLK3-216ENST00000564468 WBP1LQ9NX94 342 aa16.74■□□□□ 0.27
CLK3-216ENST00000564468 RIPOR2Q9Y4F9 1068 aa16.74■□□□□ 0.27
CLK3-216ENST00000564468 WTIPA6NIX2 430 aaPredicted RBP16.73■□□□□ 0.27
CLK3-216ENST00000564468 ITGBL1O95965 494 aaPredicted RBP16.73■□□□□ 0.27
CLK3-216ENST00000564468 LBX1P52954 281 aa16.73■□□□□ 0.27
CLK3-216ENST00000564468 DEFB115Q30KQ5 88 aa16.73■□□□□ 0.27
CLK3-216ENST00000564468 STRIP1Q5VSL9 837 aa16.73■□□□□ 0.27
CLK3-216ENST00000564468 ZNF804AQ7Z570 1209 aa16.73■□□□□ 0.27
CLK3-216ENST00000564468 FTSJ3Q8IY81 847 aaKnown RBP16.73■□□□□ 0.27
CLK3-216ENST00000564468 CNTROBQ8N137 903 aa16.73■□□□□ 0.27
CLK3-216ENST00000564468 CLUAP1Q96AJ1 413 aa16.73■□□□□ 0.27
CLK3-216ENST00000564468 FBXO3Q9UK99 471 aa16.73■□□□□ 0.27
CLK3-216ENST00000564468 MYO3BQ8WXR4 1341 aa16.72■□□□□ 0.27
CLK3-216ENST00000564468 MMP14P50281 582 aa16.72■□□□□ 0.27
CLK3-216ENST00000564468 METTL24Q5JXM2 366 aa16.72■□□□□ 0.27
CLK3-216ENST00000564468 TXNRD3Q86VQ6 643 aa16.72■□□□□ 0.27
CLK3-216ENST00000564468 MEIS3Q99687 375 aa16.72■□□□□ 0.27
CLK3-216ENST00000564468 PUS3Q9BZE2 481 aaKnown RBP16.72■□□□□ 0.27
CLK3-216ENST00000564468 LRRFIP2Q9Y608 721 aaKnown RBP16.72■□□□□ 0.27
CLK3-216ENST00000564468 MS4A1P11836 297 aa16.71■□□□□ 0.27
CLK3-216ENST00000564468 MAP1SQ66K74 1059 aaPredicted RBP16.71■□□□□ 0.27
CLK3-216ENST00000564468 TTLL5Q6EMB2 1281 aa16.71■□□□□ 0.27
CLK3-216ENST00000564468 DZIP1LQ8IYY4 767 aaKnown RBP16.71■□□□□ 0.27
CLK3-216ENST00000564468 BEGAINQ9BUH8 593 aa16.71■□□□□ 0.27
CLK3-216ENST00000564468 CD209Q9NNX6 404 aa16.71■□□□□ 0.27
CLK3-216ENST00000564468 ZNF646O15015 1829 aaPredicted RBP16.7■□□□□ 0.26
CLK3-216ENST00000564468 RASSF10A6NK89 507 aa16.7■□□□□ 0.26
CLK3-216ENST00000564468 EYA2O00167 538 aa16.7■□□□□ 0.26
CLK3-216ENST00000564468 GNAI2P04899 355 aa16.7■□□□□ 0.26
CLK3-216ENST00000564468 KLRK1P26718 216 aa16.7■□□□□ 0.26
CLK3-216ENST00000564468 FBXW7Q969H0 707 aa16.7■□□□□ 0.26
CLK3-216ENST00000564468 PGAP2Q9UHJ9 254 aa16.7■□□□□ 0.26
CLK3-216ENST00000564468 ABT1Q9ULW3 272 aaKnown RBP16.7■□□□□ 0.26
CLK3-216ENST00000564468 IRS2Q9Y4H2 1338 aa16.7■□□□□ 0.26
CLK3-216ENST00000564468 SNAP23O00161 211 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 PDE8BO95263 885 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 USP17L8P0C7I0 530 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 IL1R1P14778 569 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 RFX5P48382 616 aaPredicted RBP16.69■□□□□ 0.26
CLK3-216ENST00000564468 PTPN12Q05209 780 aaKnown RBP16.69■□□□□ 0.26
CLK3-216ENST00000564468 LRRC24Q50LG9 513 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 DACT2Q5SW24 774 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 OGFOD1Q8N543 542 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 TMEM57Q8N5G2 664 aa16.69■□□□□ 0.26
CLK3-216ENST00000564468 CIAO1O76071 339 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 HIBADHP31937 336 aaKnown RBP16.68■□□□□ 0.26
CLK3-216ENST00000564468 ZNF280AP59817 542 aaPredicted RBP16.68■□□□□ 0.26
CLK3-216ENST00000564468 GTF2IP78347 998 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 TBC1D10BQ4KMP7 808 aaPredicted RBP16.68■□□□□ 0.26
CLK3-216ENST00000564468 CAVIN4Q5BKX8 364 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 SAMD7Q7Z3H4 446 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 KLHDC4Q8TBB5 520 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 TRPM4Q8TD43 1214 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 ABHD8Q96I13 439 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 GMLQ99445 158 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 TNNQ9UQP3 1299 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 MYH13Q9UKX3 1938 aa16.68■□□□□ 0.26
CLK3-216ENST00000564468 WDR33Q9C0J8 1336 aaKnown RBP16.68■□□□□ 0.26
CLK3-216ENST00000564468 SHTN1A0MZ66 631 aa16.67■□□□□ 0.26
CLK3-216ENST00000564468 IFIT1P09914 478 aaKnown RBP16.67■□□□□ 0.26
CLK3-216ENST00000564468 ECE1P42892 770 aa16.67■□□□□ 0.26
CLK3-216ENST00000564468 HIRAP54198 1017 aaPredicted RBP16.67■□□□□ 0.26
CLK3-216ENST00000564468 MTX1Q13505 466 aa16.67■□□□□ 0.26
CLK3-216ENST00000564468 KIF4BQ2VIQ3 1234 aa16.67■□□□□ 0.26
CLK3-216ENST00000564468 RBM26Q5T8P6 1007 aaKnown RBP16.67■□□□□ 0.26
CLK3-216ENST00000564468 CDC37L1Q7L3B6 337 aa16.67■□□□□ 0.26
CLK3-216ENST00000564468 VPS37DQ86XT2 251 aa16.67■□□□□ 0.26
CLK3-216ENST00000564468 HDAC9Q9UKV0 1011 aa16.67■□□□□ 0.26
CLK3-216ENST00000564468 SRGAP3O43295 1099 aa16.66■□□□□ 0.26
CLK3-216ENST00000564468 SASH1O94885 1247 aa16.66■□□□□ 0.26
CLK3-216ENST00000564468 IL15P40933 162 aaPredicted RBP16.66■□□□□ 0.26
CLK3-216ENST00000564468 FKBP1AP62942 108 aaKnown RBP16.66■□□□□ 0.26
CLK3-216ENST00000564468 PUM3Q15397 648 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms