RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 TSGA10IPQ3SY00 556 aa15.87■□□□□ 0.13
CLK3-215ENST00000564353 STK11IPQ8N1F8 1099 aa15.87■□□□□ 0.13
CLK3-215ENST00000564353 ZNF165P49910 485 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 TTC39AQ5SRH9 613 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 SYTL4Q96C24 671 aaPredicted RBP15.86■□□□□ 0.13
CLK3-215ENST00000564353 CEP126Q9P2H0 1117 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 IL15P40933 162 aaPredicted RBP15.86■□□□□ 0.13
CLK3-215ENST00000564353 ZAP70P43403 619 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 ME1P48163 572 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 EVA1CP58658 441 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 CCAR1Q8IX12 1150 aaKnown RBP15.86■□□□□ 0.13
CLK3-215ENST00000564353 SIPA1L3O60292 1781 aaPredicted RBP15.86■□□□□ 0.13
CLK3-215ENST00000564353 SNAP23O00161 211 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 ARID5BQ14865 1188 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 C11orf57Q6ZUT1 292 aaPredicted RBP15.86■□□□□ 0.13
CLK3-215ENST00000564353 DNAJC10Q8IXB1 793 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 NKX2-3Q8TAU0 364 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 XAGE2Q96GT9 111 aa15.86■□□□□ 0.13
CLK3-215ENST00000564353 PUS7LQ9H0K6 701 aaKnown RBP15.86■□□□□ 0.13
CLK3-215ENST00000564353 RNF113AO15541 343 aaKnown RBP15.85■□□□□ 0.13
CLK3-215ENST00000564353 ZMYM1Q5SVZ6 1142 aa15.85■□□□□ 0.13
CLK3-215ENST00000564353 CLSTN2Q9H4D0 955 aa15.85■□□□□ 0.13
CLK3-215ENST00000564353 PHRF1Q9P1Y6 1649 aaKnown RBP15.85■□□□□ 0.13
CLK3-215ENST00000564353 PDIA3P30101 505 aaKnown RBP15.85■□□□□ 0.13
CLK3-215ENST00000564353 CCDC144CPQ8IYA2 1237 aa15.85■□□□□ 0.13
CLK3-215ENST00000564353 JCADQ9P266 1359 aa15.84■□□□□ 0.13
CLK3-215ENST00000564353 ALS2Q96Q42 1657 aa15.84■□□□□ 0.13
CLK3-215ENST00000564353 ELP1O95163 1332 aa15.84■□□□□ 0.13
CLK3-215ENST00000564353 HELBQ8NG08 1087 aaPredicted RBP15.84■□□□□ 0.13
CLK3-215ENST00000564353 INCENPQ9NQS7 918 aa15.84■□□□□ 0.13
CLK3-215ENST00000564353 SLAIN2Q9P270 581 aa15.84■□□□□ 0.13
CLK3-215ENST00000564353 PFKFB2O60825 505 aa15.84■□□□□ 0.13
CLK3-215ENST00000564353 GTF2E1P29083 439 aaPredicted RBP15.84■□□□□ 0.13
CLK3-215ENST00000564353 ISM2Q6H9L7 571 aa15.84■□□□□ 0.13
CLK3-215ENST00000564353 A0A1B0GVL5 298 aa15.83■□□□□ 0.13
CLK3-215ENST00000564353 ADD1P35611 737 aaKnown RBP15.83■□□□□ 0.13
CLK3-215ENST00000564353 HLFQ16534 295 aa15.83■□□□□ 0.13
CLK3-215ENST00000564353 SH3TC1Q8TE82 1336 aa15.83■□□□□ 0.12
CLK3-215ENST00000564353 ILDR1Q86SU0 546 aaPredicted RBP15.83■□□□□ 0.12
CLK3-215ENST00000564353 C16orf45Q96MC5 204 aaPredicted RBP15.83■□□□□ 0.12
CLK3-215ENST00000564353 PDCL3Q9H2J4 239 aa15.83■□□□□ 0.12
CLK3-215ENST00000564353 PCDH11XQ9BZA7 1347 aa15.83■□□□□ 0.12
CLK3-215ENST00000564353 PCDH11YQ9BZA8 1340 aa15.83■□□□□ 0.12
CLK3-215ENST00000564353 FOXP2O15409 715 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 FGAP02671 866 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 APPP05067 770 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 EXOSC10Q01780 885 aaKnown RBP15.82■□□□□ 0.12
CLK3-215ENST00000564353 AIFM3Q96NN9 605 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 DDX19AQ9NUU7 478 aaKnown RBP15.82■□□□□ 0.12
CLK3-215ENST00000564353 TNS3Q68CZ2 1445 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 SCN11AQ9UI33 1791 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 KIF1AQ12756 1690 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 AFDNP55196 1824 aaKnown RBP15.82■□□□□ 0.12
CLK3-215ENST00000564353 IL2RBP14784 551 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 CCDC144BQ3MJ40 725 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 CCDC158Q5M9N0 1113 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 CCDC191Q8NCU4 936 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 KIAA1524Q8TCG1 905 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 ALDH8A1Q9H2A2 487 aaPredicted RBP15.82■□□□□ 0.12
CLK3-215ENST00000564353 HELLSQ9NRZ9 838 aa15.82■□□□□ 0.12
CLK3-215ENST00000564353 KLF18A0A0U1RQI7 1052 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 BIN1O00499 593 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 FDPSP14324 419 aaKnown RBP15.81■□□□□ 0.12
CLK3-215ENST00000564353 FSIP1Q8NA03 581 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 SMARCC2Q8TAQ2 1214 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 KAT6BQ8WYB5 2073 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 TMOD3Q9NYL9 352 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 CFAP45Q9UL16 551 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 WDR17Q8IZU2 1322 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 MRC1P22897 1456 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 PALLDQ8WX93 1383 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 GOLGA8BA8MQT2 603 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 IDH1O75874 414 aaKnown RBP15.81■□□□□ 0.12
CLK3-215ENST00000564353 METTL24Q5JXM2 366 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 FILIP1Q7Z7B0 1213 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 DSCC1Q9BVC3 393 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 GREM2Q9H772 168 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 CLIC4Q9Y696 253 aa15.81■□□□□ 0.12
CLK3-215ENST00000564353 UBE2Q2LH0YL09 131 aa15.8■□□□□ 0.12
CLK3-215ENST00000564353 PRC1O43663 620 aa15.8■□□□□ 0.12
CLK3-215ENST00000564353 CLIP2Q9UDT6 1046 aa15.8■□□□□ 0.12
CLK3-215ENST00000564353 IFIT5Q13325 482 aaKnown RBP15.8■□□□□ 0.12
CLK3-215ENST00000564353 LDHAL6AQ6ZMR3 332 aa15.8■□□□□ 0.12
CLK3-215ENST00000564353 MYL10Q9BUA6 226 aa15.8■□□□□ 0.12
CLK3-215ENST00000564353 SENP2Q9HC62 589 aa15.8■□□□□ 0.12
CLK3-215ENST00000564353 TBC1D2BQ9UPU7 963 aa15.8■□□□□ 0.12
CLK3-215ENST00000564353 DCCP43146 1447 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 ZNF75DP51815 510 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 ZNF592Q92610 1267 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 ZSCAN16Q9H4T2 348 aaPredicted RBP15.79■□□□□ 0.12
CLK3-215ENST00000564353 PRDM10Q9NQV6 1147 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 TCIRG1Q13488 830 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 CCDC73Q6ZRK6 1079 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 MYRIPQ8NFW9 859 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 PIGBQ92521 554 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 CAMTA1Q9Y6Y1 1673 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 CARMIL3Q8ND23 1372 aa15.79■□□□□ 0.12
CLK3-215ENST00000564353 GOLGA6L6A8MZA4 724 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 GOLGA6L19H0YKK7 550 aa15.78■□□□□ 0.12
CLK3-215ENST00000564353 DYNC1I1O14576 645 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms