RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-208	ENST00000563911	ALKBH8	Q96BT7	664 aa	Known RBP	9.18	□□□□□ -0.94
HERPUD1-208	ENST00000563911	CFDP1	Q9UEE9	299 aa	Predicted RBP	9.18	□□□□□ -0.94
HERPUD1-208	ENST00000563911	PCDHGC4	Q9Y5F7	938 aa		9.18	□□□□□ -0.94
HERPUD1-208	ENST00000563911	MED14	O60244	1454 aa		9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	CCDC18	Q5T9S5	1454 aa		9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	NPHP4	O75161	1426 aa	Predicted RBP	9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	KHNYN	O15037	678 aa	Known RBP	9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	ZNF438	Q7Z4V0	828 aa		9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	ANKLE2	Q86XL3	938 aa		9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	TRIM22	Q8IYM9	498 aa		9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	CUEDC1	Q9NWM3	386 aa	Predicted RBP	9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	KCNMB2	Q9Y691	235 aa		9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	POLR1A	O95602	1720 aa	Predicted RBP	9.17	□□□□□ -0.94
HERPUD1-208	ENST00000563911	MIA2	Q96PC5	1412 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	DCDC2B	A2VCK2	349 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	UNCX	A6NJT0	531 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	KIF3B	O15066	747 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	XYLB	O75191	536 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	NEFL	P07196	543 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	THBS1	P07996	1170 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	TRIP4	Q15650	581 aa	Predicted RBP	9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	KCNH4	Q9UQ05	1017 aa		9.16	□□□□□ -0.94
HERPUD1-208	ENST00000563911	PZP	P20742	1482 aa		9.15	□□□□□ -0.94
HERPUD1-208	ENST00000563911	LDHB	P07195	334 aa	Known RBP	9.15	□□□□□ -0.94
HERPUD1-208	ENST00000563911	FAM157B	P0CG42	384 aa		9.15	□□□□□ -0.94
HERPUD1-208	ENST00000563911	ITGA6	P23229	1130 aa		9.15	□□□□□ -0.94
HERPUD1-208	ENST00000563911	GRN	P28799	593 aa	Known RBP	9.15	□□□□□ -0.94
HERPUD1-208	ENST00000563911	SFSWAP	Q12872	951 aa	Known RBP	9.15	□□□□□ -0.94
HERPUD1-208	ENST00000563911	PNMA6F	A0A0J9YX94	578 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	LTK	P29376	864 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ATP2B2	Q01814	1243 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	TNP2	Q05952	138 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ORC1	Q13415	861 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	PDE12	Q6L8Q7	609 aa	Known RBP	9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	XKR5	Q6UX68	686 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	THEMIS	Q8N1K5	641 aa	Predicted RBP	9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	GMCL1	Q96IK5	515 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	BCL11A	Q9H165	835 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ELP3	Q9H9T3	547 aa		9.14	□□□□□ -0.95
HERPUD1-208	ENST00000563911	CCNB3	Q8WWL7	1395 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	BNIP3L	O60238	219 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	MAPT	P10636	758 aa	Known RBP	9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	KCNQ4	P56696	695 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	FGD1	P98174	961 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	UBAP2L	Q14157	1087 aa	Known RBP	9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	GTPBP3	Q969Y2	492 aa	Known RBP	9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	MRRF	Q96E11	262 aa	Known RBP	9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	CSRNP1	Q96S65	589 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	WWC3	Q9ULE0	1092 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ADGB	Q8N7X0	1667 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	RTEL1-TNFRSF6B	F6WH68	1400 aa		9.13	□□□□□ -0.95
HERPUD1-208	ENST00000563911	UGGT1	Q9NYU2	1555 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	WASHC2C	Q9Y4E1	1318 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	EIF1AY	O14602	144 aa	Known RBP	9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	EFS	O43281	561 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	TNFRSF21	O75509	655 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	EGFR	P00533	1210 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ENOX2	Q16206	610 aa	Known RBP	9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ZNF837	Q96EG3	531 aa	Predicted RBP	9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ABHD17A	Q96GS6	310 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	C11orf16	Q9NQ32	467 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	TMEM63C	Q9P1W3	806 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	FOXD3	Q9UJU5	478 aa	Predicted RBP	9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	PLEKHH2	Q8IVE3	1493 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	FYCO1	Q9BQS8	1478 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	DEPDC5	O75140	1603 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	XIRP1	Q702N8	1843 aa	Known RBP	9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	TIAM1	Q13009	1591 aa		9.12	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ZC3H13	Q5T200	1668 aa	Known RBP	9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	NCOA2	Q15596	1464 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	CDC14C	A4D256	554 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	PPFIA3	O75145	1194 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	SASH3	O75995	380 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	LAMC2	Q13753	1193 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	CCIN	Q13939	588 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	FOXR1	Q6PIV2	292 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	KRT25	Q7Z3Z0	450 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	NLRP13	Q86W25	1043 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	STRN4	Q9NRL3	753 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	MARK1	Q9P0L2	795 aa		9.11	□□□□□ -0.95
HERPUD1-208	ENST00000563911	IQGAP1	P46940	1657 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	LCE2B	O14633	110 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	CPNE3	O75131	537 aa	Known RBP	9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	PHACTR2	O75167	634 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	PRPF40A	O75400	957 aa	Known RBP	9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	XPC	Q01831	940 aa	Predicted RBP	9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	TTC39B	Q5VTQ0	682 aa	Predicted RBP	9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	ALG1L	Q6GMV1	187 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	SNX29	Q8TEQ0	813 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	PNMA5	Q96PV4	448 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	SETDB2	Q96T68	719 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	DUSP9	Q99956	384 aa	Known RBP	9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	GSX2	Q9BZM3	304 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	DNAJC25	Q9H1X3	360 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	NDFIP2	Q9NV92	336 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	PHF24	Q9UPV7	400 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	KDM5D	Q9BY66	1539 aa		9.1	□□□□□ -0.95
HERPUD1-208	ENST00000563911	NLRP1	Q9C000	1473 aa		9.09	□□□□□ -0.95
HERPUD1-208	ENST00000563911	POTEC	B2RU33	542 aa		9.09	□□□□□ -0.95
HERPUD1-208	ENST00000563911	CD33	P20138	364 aa		9.09	□□□□□ -0.95

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