RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 CALCOCO1Q9P1Z2 691 aa12.14□□□□□ -0.47
RNF40-204ENST00000563683 TPCN1Q9ULQ1 816 aa12.14□□□□□ -0.47
RNF40-204ENST00000563683 AXIN2Q9Y2T1 843 aa12.14□□□□□ -0.47
RNF40-204ENST00000563683 IFIT3O14879 490 aaKnown RBP12.13□□□□□ -0.47
RNF40-204ENST00000563683 SLFN14P0C7P3 912 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 ANO10Q9NW15 660 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 CAVIN2O95810 425 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 PDE4CQ08493 712 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 TERF2Q15554 542 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 CEP135Q66GS9 1140 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 TTLL7Q6ZT98 887 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 NCOA7Q8NI08 942 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 TTC14Q96N46 770 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 TRMT1Q9NXH9 659 aaKnown RBP12.13□□□□□ -0.47
RNF40-204ENST00000563683 PTPDC1A2A3K4 754 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 MAP3K12Q12852 859 aa12.13□□□□□ -0.47
RNF40-204ENST00000563683 GNL3LQ9NVN8 582 aaKnown RBP12.13□□□□□ -0.47
RNF40-204ENST00000563683 KDRP35968 1356 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 AMOTL1Q8IY63 956 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 TMEM51Q9NW97 253 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 RNF113AO15541 343 aaKnown RBP12.12□□□□□ -0.47
RNF40-204ENST00000563683 TPM1P09493 284 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 RXRAP19793 462 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 MEX3CQ5U5Q3 659 aaKnown RBP12.12□□□□□ -0.47
RNF40-204ENST00000563683 MTMR6Q9Y217 621 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 EYA2O00167 538 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 ZNF75DP51815 510 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 MRVI1Q9Y6F6 885 aa12.12□□□□□ -0.47
RNF40-204ENST00000563683 SASH1O94885 1247 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 POLA2Q14181 598 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 BRMS1Q9HCU9 246 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 CRB1P82279 1406 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 ELP1O95163 1332 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 PRC1O43663 620 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 LARGE1O95461 756 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 CFAP100Q494V2 611 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 TTLL5Q6EMB2 1281 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 OTUD7BQ6GQQ9 843 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 KBTBD3Q8NAB2 608 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 TEX13AQ9BXU3 409 aaPredicted RBP12.11□□□□□ -0.47
RNF40-204ENST00000563683 SLC12A7Q9Y666 1083 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 MARCKSP29966 332 aaPredicted RBP12.11□□□□□ -0.47
RNF40-204ENST00000563683 MNS1Q8NEH6 495 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 TM6SF1Q9BZW5 370 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 ZSWIM6Q9HCJ5 1215 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 GOLGA8AA7E2F4 631 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 METAP2P50579 478 aaKnown RBP eCLIP12.11□□□□□ -0.47
RNF40-204ENST00000563683 PTPN14Q15678 1187 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 TMEM67Q5HYA8 995 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 ACSBG1Q96GR2 724 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 CBX8Q9HC52 389 aa12.11□□□□□ -0.47
RNF40-204ENST00000563683 DBNLQ9UJU6 430 aaKnown RBP12.11□□□□□ -0.47
RNF40-204ENST00000563683 KIF2AO00139 706 aaPredicted RBP12.1□□□□□ -0.47
RNF40-204ENST00000563683 SLC3A2P08195 630 aaKnown RBP12.1□□□□□ -0.47
RNF40-204ENST00000563683 ATP5JP18859 108 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 IARSP41252 1262 aaKnown RBP12.1□□□□□ -0.47
RNF40-204ENST00000563683 TSR1Q2NL82 804 aaKnown RBP12.1□□□□□ -0.47
RNF40-204ENST00000563683 ZNF589Q86UQ0 364 aaPredicted RBP12.1□□□□□ -0.47
RNF40-204ENST00000563683 TCHHQ07283 1943 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 CDC25BP30305 580 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 LRMPQ12912 555 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 PLA2G4DQ86XP0 818 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 ERO1AQ96HE7 468 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 PCMTD1Q96MG8 357 aaPredicted RBP12.1□□□□□ -0.47
RNF40-204ENST00000563683 CTAGE5O15320 804 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 SLC5A1P13866 664 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 TDRD7Q8NHU6 1098 aaKnown RBP12.1□□□□□ -0.47
RNF40-204ENST00000563683 TSPYL1Q9H0U9 437 aa12.1□□□□□ -0.47
RNF40-204ENST00000563683 RANBP6O60518 1105 aaKnown RBP12.09□□□□□ -0.47
RNF40-204ENST00000563683 ZFYP08048 801 aaPredicted RBP12.09□□□□□ -0.47
RNF40-204ENST00000563683 MAP4K1Q92918 833 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 MAP2P11137 1827 aaKnown RBP12.09□□□□□ -0.47
RNF40-204ENST00000563683 SLFNL1Q499Z3 407 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 LRRC24Q50LG9 513 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 DNAJC10Q8IXB1 793 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 SLC26A6Q9BXS9 759 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 ERBB3P21860 1342 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 STX1AQ16623 288 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 ANKRD20A12PQ8NF67 263 aa12.09□□□□□ -0.47
RNF40-204ENST00000563683 IRS4O14654 1257 aaPredicted RBP12.08□□□□□ -0.48
RNF40-204ENST00000563683 HSP90AA4PQ58FG1 418 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 USP31Q70CQ4 1352 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 LIG1P18858 919 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 SLC4A8Q2Y0W8 1093 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 EPHA10Q5JZY3 1008 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 CCDC191Q8NCU4 936 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 LEO1Q8WVC0 666 aaPredicted RBP12.08□□□□□ -0.48
RNF40-204ENST00000563683 XAGE2Q96GT9 111 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 ALG1Q9BT22 464 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 PCDH11XQ9BZA7 1347 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 PCDH11YQ9BZA8 1340 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 DLG5Q8TDM6 1919 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 IGKV5-2P06315 115 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 TTF1Q15361 905 aaPredicted RBP12.08□□□□□ -0.48
RNF40-204ENST00000563683 KLHL10Q6JEL2 608 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 TTC6Q86TZ1 520 aa12.08□□□□□ -0.48
RNF40-204ENST00000563683 ERCC4Q92889 916 aaPredicted RBP12.08□□□□□ -0.48
RNF40-204ENST00000563683 A0A1B0GVL5 298 aa12.07□□□□□ -0.48
RNF40-204ENST00000563683 SFPQP23246 707 aaKnown RBP eCLIP12.07□□□□□ -0.48
RNF40-204ENST00000563683 BMS1Q14692 1282 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms