RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 ZIC5Q96T25 663 aa20.12■□□□□ 0.81
CLK3-211ENST00000563297 TSKSQ9UJT2 592 aa20.12■□□□□ 0.81
CLK3-211ENST00000563297 SPEF2Q9C093 1822 aa20.11■□□□□ 0.81
CLK3-211ENST00000563297 USP17L8P0C7I0 530 aa20.11■□□□□ 0.81
CLK3-211ENST00000563297 ITGA6P23229 1130 aa20.11■□□□□ 0.81
CLK3-211ENST00000563297 IGHMBP2P38935 993 aaKnown RBP20.11■□□□□ 0.81
CLK3-211ENST00000563297 SULF1Q8IWU6 871 aa20.11■□□□□ 0.81
CLK3-211ENST00000563297 MYH16Q9H6N6 1097 aa20.11■□□□□ 0.81
CLK3-211ENST00000563297 SPINK5Q9NQ38 1064 aaPredicted RBP20.11■□□□□ 0.81
CLK3-211ENST00000563297 LEMD3Q9Y2U8 911 aa20.11■□□□□ 0.81
CLK3-211ENST00000563297 MED23Q9ULK4 1368 aa20.1■□□□□ 0.81
CLK3-211ENST00000563297 NOGQ13253 232 aa20.1■□□□□ 0.81
CLK3-211ENST00000563297 RGMBQ6NW40 437 aa20.1■□□□□ 0.81
CLK3-211ENST00000563297 TXNRD3Q86VQ6 643 aa20.1■□□□□ 0.81
CLK3-211ENST00000563297 MYOZ2Q9NPC6 264 aa20.1■□□□□ 0.81
CLK3-211ENST00000563297 FAM155AB1AL88 458 aaPredicted RBP20.09■□□□□ 0.81
CLK3-211ENST00000563297 CA12O43570 354 aa20.09■□□□□ 0.81
CLK3-211ENST00000563297 FAM161AQ3B820 660 aa20.09■□□□□ 0.81
CLK3-211ENST00000563297 ANGEL2Q5VTE6 544 aaKnown RBP20.09■□□□□ 0.81
CLK3-211ENST00000563297 DACT2Q5SW24 774 aa20.08■□□□□ 0.81
CLK3-211ENST00000563297 CDCA5Q96FF9 252 aa20.08■□□□□ 0.81
CLK3-211ENST00000563297 MPHOSPH8Q99549 860 aa20.08■□□□□ 0.81
CLK3-211ENST00000563297 MXD3Q9BW11 206 aa20.08■□□□□ 0.81
CLK3-211ENST00000563297 COA1Q9GZY4 146 aa20.08■□□□□ 0.81
CLK3-211ENST00000563297 CASP8AP2Q9UKL3 1982 aa20.08■□□□□ 0.8
CLK3-211ENST00000563297 ZNF804BA4D1E1 1349 aa20.07■□□□□ 0.8
CLK3-211ENST00000563297 F6X3S4 739 aa20.07■□□□□ 0.8
CLK3-211ENST00000563297 STRIP1Q5VSL9 837 aa20.07■□□□□ 0.8
CLK3-211ENST00000563297 CCDC102AQ96A19 550 aa20.07■□□□□ 0.8
CLK3-211ENST00000563297 ABHD8Q96I13 439 aa20.07■□□□□ 0.8
CLK3-211ENST00000563297 ANKRD2Q9GZV1 360 aa20.07■□□□□ 0.8
CLK3-211ENST00000563297 ZNF157P51786 506 aaPredicted RBP20.06■□□□□ 0.8
CLK3-211ENST00000563297 BEND3Q5T5X7 828 aa20.06■□□□□ 0.8
CLK3-211ENST00000563297 PITPNM2Q9BZ72 1349 aa20.05■□□□□ 0.8
CLK3-211ENST00000563297 KLRK1P26718 216 aa20.05■□□□□ 0.8
CLK3-211ENST00000563297 FOXO4P98177 505 aa20.05■□□□□ 0.8
CLK3-211ENST00000563297 CHRNDQ07001 517 aa20.05■□□□□ 0.8
CLK3-211ENST00000563297 NBPF9Q3BBW0 867 aa20.05■□□□□ 0.8
CLK3-211ENST00000563297 FAM9BQ8IZU0 186 aa20.05■□□□□ 0.8
CLK3-211ENST00000563297 ANKRD18BA2A2Z9 1011 aa20.04■□□□□ 0.8
CLK3-211ENST00000563297 KIF23Q02241 960 aaPredicted RBP20.04■□□□□ 0.8
CLK3-211ENST00000563297 TTLL5Q6EMB2 1281 aa20.04■□□□□ 0.8
CLK3-211ENST00000563297 OGFOD1Q8N543 542 aa20.04■□□□□ 0.8
CLK3-211ENST00000563297 FBXW7Q969H0 707 aa20.04■□□□□ 0.8
CLK3-211ENST00000563297 SCAF8Q9UPN6 1271 aaKnown RBP20.04■□□□□ 0.8
CLK3-211ENST00000563297 ZNF646O15015 1829 aaPredicted RBP20.03■□□□□ 0.8
CLK3-211ENST00000563297 MYO3BQ8WXR4 1341 aa20.02■□□□□ 0.8
CLK3-211ENST00000563297 SNAP23O00161 211 aa20.02■□□□□ 0.8
CLK3-211ENST00000563297 WNT10BO00744 389 aa20.02■□□□□ 0.8
CLK3-211ENST00000563297 IFIT5Q13325 482 aaKnown RBP20.02■□□□□ 0.8
CLK3-211ENST00000563297 SLC10A3P09131 477 aa20.01■□□□□ 0.79
CLK3-211ENST00000563297 MMP14P50281 582 aa20.01■□□□□ 0.79
CLK3-211ENST00000563297 FKBP1BP68106 108 aa20.01■□□□□ 0.79
CLK3-211ENST00000563297 GTF2IP78347 998 aa20.01■□□□□ 0.79
CLK3-211ENST00000563297 EPHA10Q5JZY3 1008 aa20.01■□□□□ 0.79
CLK3-211ENST00000563297 PRAMEF18Q5VWM3 479 aa20.01■□□□□ 0.79
CLK3-211ENST00000563297 HELBQ8NG08 1087 aaPredicted RBP20.01■□□□□ 0.79
CLK3-211ENST00000563297 IRS2Q9Y4H2 1338 aa20.01■□□□□ 0.79
CLK3-211ENST00000563297 TAF5LO75529 589 aa20■□□□□ 0.79
CLK3-211ENST00000563297 KCNJ4P48050 445 aa20■□□□□ 0.79
CLK3-211ENST00000563297 LMBR1LQ6UX01 489 aa20■□□□□ 0.79
CLK3-211ENST00000563297 CSRNP1Q96S65 589 aa20■□□□□ 0.79
CLK3-211ENST00000563297 CD209Q9NNX6 404 aa20■□□□□ 0.79
CLK3-211ENST00000563297 CHMP3Q9Y3E7 222 aa20■□□□□ 0.79
CLK3-211ENST00000563297 GRM8O00222 908 aa19.99■□□□□ 0.79
CLK3-211ENST00000563297 C15orf52Q6ZUT6 534 aaKnown RBP19.99■□□□□ 0.79
CLK3-211ENST00000563297 MOB2Q70IA6 237 aa19.99■□□□□ 0.79
CLK3-211ENST00000563297 AKAP11Q9UKA4 1901 aa19.98■□□□□ 0.79
CLK3-211ENST00000563297 RASAL3Q86YV0 1011 aa19.98■□□□□ 0.79
CLK3-211ENST00000563297 KIAA0825Q8IV33 1275 aa19.98■□□□□ 0.79
CLK3-211ENST00000563297 MCOLN1Q9GZU1 580 aa19.98■□□□□ 0.79
CLK3-211ENST00000563297 RNF186Q9NXI6 227 aa19.98■□□□□ 0.79
CLK3-211ENST00000563297 SAGE1Q9NXZ1 904 aa19.98■□□□□ 0.79
CLK3-211ENST00000563297 UBE2Q2LH0YL09 131 aa19.97■□□□□ 0.79
CLK3-211ENST00000563297 TRPA1O75762 1119 aa19.97■□□□□ 0.79
CLK3-211ENST00000563297 ALDH1L1O75891 902 aa19.97■□□□□ 0.79
CLK3-211ENST00000563297 ZBED3Q96IU2 234 aaPredicted RBP19.97■□□□□ 0.79
CLK3-211ENST00000563297 ZNF594Q96JF6 807 aaPredicted RBP19.97■□□□□ 0.79
CLK3-211ENST00000563297 C9orf78Q9NZ63 289 aaPredicted RBP19.97■□□□□ 0.79
CLK3-211ENST00000563297 HDAC9Q9UKV0 1011 aa19.97■□□□□ 0.79
CLK3-211ENST00000563297 CCDC85CA6NKD9 419 aa19.96■□□□□ 0.79
CLK3-211ENST00000563297 SASH1O94885 1247 aa19.96■□□□□ 0.79
CLK3-211ENST00000563297 CCDC57Q2TAC2 916 aa19.96■□□□□ 0.79
CLK3-211ENST00000563297 SLC4A10Q6U841 1118 aa19.96■□□□□ 0.79
CLK3-211ENST00000563297 LDHAL6AQ6ZMR3 332 aa19.96■□□□□ 0.79
CLK3-211ENST00000563297 ZNF521Q96K83 1311 aa19.96■□□□□ 0.79
CLK3-211ENST00000563297 PAPPA2Q9BXP8 1791 aa19.95■□□□□ 0.78
CLK3-211ENST00000563297 DGKZQ13574 1117 aa19.95■□□□□ 0.78
CLK3-211ENST00000563297 REM2Q8IYK8 340 aaPredicted RBP19.95■□□□□ 0.78
CLK3-211ENST00000563297 CERS5Q8N5B7 392 aa19.95■□□□□ 0.78
CLK3-211ENST00000563297 SRCIN1Q9C0H9 1055 aa19.95■□□□□ 0.78
CLK3-211ENST00000563297 PLIN1O60240 522 aa19.94■□□□□ 0.78
CLK3-211ENST00000563297 IL1R1P14778 569 aa19.94■□□□□ 0.78
CLK3-211ENST00000563297 NF2P35240 595 aa19.93■□□□□ 0.78
CLK3-211ENST00000563297 TTLL12Q14166 644 aaPredicted RBP19.93■□□□□ 0.78
CLK3-211ENST00000563297 TAF7LQ5H9L4 462 aa19.93■□□□□ 0.78
CLK3-211ENST00000563297 ZNF804AQ7Z570 1209 aa19.93■□□□□ 0.78
CLK3-211ENST00000563297 KAZALD1Q96I82 304 aa19.93■□□□□ 0.78
CLK3-211ENST00000563297 CNNM1Q9NRU3 951 aa19.93■□□□□ 0.78
CLK3-211ENST00000563297 DLGAP5Q15398 846 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms