RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 KLHL40Q2TBA0 621 aa22.81■■□□□ 1.24
SMPD3-203ENST00000563226 NEK1Q96PY6 1258 aa22.81■■□□□ 1.24
SMPD3-203ENST00000563226 SNAP23O00161 211 aa22.8■■□□□ 1.24
SMPD3-203ENST00000563226 PHKA1P46020 1223 aa22.8■■□□□ 1.24
SMPD3-203ENST00000563226 ALDH8A1Q9H2A2 487 aaPredicted RBP22.8■■□□□ 1.24
SMPD3-203ENST00000563226 WDR33Q9C0J8 1336 aaKnown RBP22.8■■□□□ 1.24
SMPD3-203ENST00000563226 SCN7AQ01118 1682 aa22.8■■□□□ 1.24
SMPD3-203ENST00000563226 FGFR2P21802 821 aa22.8■■□□□ 1.24
SMPD3-203ENST00000563226 MROH5Q6ZUA9 1318 aa22.79■■□□□ 1.24
SMPD3-203ENST00000563226 TCHHQ07283 1943 aa22.79■■□□□ 1.24
SMPD3-203ENST00000563226 GOLGA6L3A6NEY3 463 aa22.79■■□□□ 1.24
SMPD3-203ENST00000563226 SYT1P21579 422 aa22.79■■□□□ 1.24
SMPD3-203ENST00000563226 GJB2P29033 226 aa22.79■■□□□ 1.24
SMPD3-203ENST00000563226 FOXD4L6Q3SYB3 417 aaPredicted RBP22.79■■□□□ 1.24
SMPD3-203ENST00000563226 FOXD4L3Q6VB84 417 aaPredicted RBP22.79■■□□□ 1.24
SMPD3-203ENST00000563226 ZNF652Q9Y2D9 606 aa22.79■■□□□ 1.24
SMPD3-203ENST00000563226 CNTNAP4Q9C0A0 1308 aa22.79■■□□□ 1.24
SMPD3-203ENST00000563226 FOXP2O15409 715 aa22.78■■□□□ 1.24
SMPD3-203ENST00000563226 PUM3Q15397 648 aaKnown RBP22.78■■□□□ 1.24
SMPD3-203ENST00000563226 WASHC4Q2M389 1173 aa22.78■■□□□ 1.24
SMPD3-203ENST00000563226 CCDC102BQ68D86 513 aa22.78■■□□□ 1.24
SMPD3-203ENST00000563226 CCDC152Q4G0S7 254 aa22.78■■□□□ 1.24
SMPD3-203ENST00000563226 ZNF512BQ96KM6 892 aaPredicted RBP22.78■■□□□ 1.24
SMPD3-203ENST00000563226 BRPF3Q9ULD4 1205 aa22.78■■□□□ 1.24
SMPD3-203ENST00000563226 TAF1P21675 1872 aa22.77■■□□□ 1.24
SMPD3-203ENST00000563226 ANKRD1Q15327 319 aa22.77■■□□□ 1.24
SMPD3-203ENST00000563226 MPHOSPH8Q99549 860 aa22.77■■□□□ 1.24
SMPD3-203ENST00000563226 STX6O43752 255 aa22.77■■□□□ 1.23
SMPD3-203ENST00000563226 ZFYP08048 801 aaPredicted RBP22.77■■□□□ 1.23
SMPD3-203ENST00000563226 TTLL5Q6EMB2 1281 aa22.77■■□□□ 1.23
SMPD3-203ENST00000563226 CLEC4GQ6UXB4 293 aa22.77■■□□□ 1.23
SMPD3-203ENST00000563226 C3orf67Q6ZVT6 689 aa22.77■■□□□ 1.23
SMPD3-203ENST00000563226 GPT2Q8TD30 523 aa22.77■■□□□ 1.23
SMPD3-203ENST00000563226 LPIN2Q92539 896 aa22.77■■□□□ 1.23
SMPD3-203ENST00000563226 PUS7LQ9H0K6 701 aaKnown RBP22.77■■□□□ 1.23
SMPD3-203ENST00000563226 PIH1D3Q9NQM4 214 aaKnown RBP22.77■■□□□ 1.23
SMPD3-203ENST00000563226 RTL9Q8NET4 1388 aa22.76■■□□□ 1.23
SMPD3-203ENST00000563226 ERFEQ4G0M1 354 aa22.76■■□□□ 1.23
SMPD3-203ENST00000563226 LRRC2Q9BYS8 371 aa22.76■■□□□ 1.23
SMPD3-203ENST00000563226 BCL2L12Q9HB09 334 aa22.76■■□□□ 1.23
SMPD3-203ENST00000563226 ZSCAN22P10073 491 aaPredicted RBP22.75■■□□□ 1.23
SMPD3-203ENST00000563226 ARID4AP29374 1257 aaPredicted RBP22.75■■□□□ 1.23
SMPD3-203ENST00000563226 LRRFIP1Q32MZ4 808 aaKnown RBP22.75■■□□□ 1.23
SMPD3-203ENST00000563226 APPBP2Q92624 585 aa22.75■■□□□ 1.23
SMPD3-203ENST00000563226 SBF2Q86WG5 1849 aa22.75■■□□□ 1.23
SMPD3-203ENST00000563226 STK3Q13188 491 aa22.75■■□□□ 1.23
SMPD3-203ENST00000563226 L1TD1Q5T7N2 865 aaKnown RBP22.75■■□□□ 1.23
SMPD3-203ENST00000563226 BICDL1Q6ZP65 573 aa22.75■■□□□ 1.23
SMPD3-203ENST00000563226 Q6ZUG5 572 aa22.75■■□□□ 1.23
SMPD3-203ENST00000563226 GAS2L3Q86XJ1 694 aa22.75■■□□□ 1.23
SMPD3-203ENST00000563226 NCLP19338 710 aaKnown RBP22.74■■□□□ 1.23
SMPD3-203ENST00000563226 MEX3CQ5U5Q3 659 aaKnown RBP22.74■■□□□ 1.23
SMPD3-203ENST00000563226 NSFL1CQ9UNZ2 370 aaKnown RBP22.74■■□□□ 1.23
SMPD3-203ENST00000563226 TBC1D9BQ66K14 1250 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 GJD4Q96KN9 370 aaPredicted RBP22.73■■□□□ 1.23
SMPD3-203ENST00000563226 SRP68Q9UHB9 627 aaKnown RBP22.73■■□□□ 1.23
SMPD3-203ENST00000563226 TAF1LQ8IZX4 1826 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 E7EWF7 191 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 XRCC6P12956 609 aaKnown RBP eCLIP22.73■■□□□ 1.23
SMPD3-203ENST00000563226 SLC5A1P13866 664 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 ADD2P35612 726 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 CAVIN1Q6NZI2 390 aaKnown RBP22.73■■□□□ 1.23
SMPD3-203ENST00000563226 AMIGO3Q86WK7 504 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 GDPD2Q9HCC8 539 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 LY75O60449 1722 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 A0A1B0GUL6 1792 aa22.73■■□□□ 1.23
SMPD3-203ENST00000563226 HSPA1LP34931 641 aa22.72■■□□□ 1.23
SMPD3-203ENST00000563226 IGHMBP2P38935 993 aaKnown RBP22.72■■□□□ 1.23
SMPD3-203ENST00000563226 MTMR6Q9Y217 621 aa22.72■■□□□ 1.23
SMPD3-203ENST00000563226 AFF2P51816 1311 aa22.72■■□□□ 1.23
SMPD3-203ENST00000563226 CERKQ8TCT0 537 aa22.72■■□□□ 1.23
SMPD3-203ENST00000563226 CCNL1Q9UK58 526 aaPredicted RBP22.72■■□□□ 1.23
SMPD3-203ENST00000563226 GPAA1O43292 621 aa22.71■■□□□ 1.23
SMPD3-203ENST00000563226 F13A1P00488 732 aa22.71■■□□□ 1.23
SMPD3-203ENST00000563226 UQCRFS1P1P0C7P4 283 aa22.71■■□□□ 1.23
SMPD3-203ENST00000563226 HSP90B1P14625 803 aaKnown RBP22.71■■□□□ 1.23
SMPD3-203ENST00000563226 SLC9C2Q5TAH2 1124 aa22.71■■□□□ 1.23
SMPD3-203ENST00000563226 RC3H1Q5TC82 1133 aaKnown RBP22.71■■□□□ 1.23
SMPD3-203ENST00000563226 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.71■■□□□ 1.23
SMPD3-203ENST00000563226 RBM27Q9P2N5 1060 aaKnown RBP22.71■■□□□ 1.23
SMPD3-203ENST00000563226 DOCK2Q92608 1830 aa22.71■■□□□ 1.23
SMPD3-203ENST00000563226 GNPATO15228 680 aa22.7■■□□□ 1.23
SMPD3-203ENST00000563226 RPS6KA4O75676 772 aa22.7■■□□□ 1.23
SMPD3-203ENST00000563226 IDH1O75874 414 aaKnown RBP22.7■■□□□ 1.23
SMPD3-203ENST00000563226 DHX32Q7L7V1 743 aaKnown RBP22.7■■□□□ 1.23
SMPD3-203ENST00000563226 BRF1Q92994 677 aa22.7■■□□□ 1.23
SMPD3-203ENST00000563226 WWC3Q9ULE0 1092 aa22.7■■□□□ 1.23
SMPD3-203ENST00000563226 CHRNDQ07001 517 aa22.7■■□□□ 1.22
SMPD3-203ENST00000563226 RASGRF1Q13972 1273 aa22.7■■□□□ 1.22
SMPD3-203ENST00000563226 TTF1Q15361 905 aaPredicted RBP22.7■■□□□ 1.22
SMPD3-203ENST00000563226 ATRNO75882 1429 aa22.69■■□□□ 1.22
SMPD3-203ENST00000563226 COL24A1Q17RW2 1714 aa22.69■■□□□ 1.22
SMPD3-203ENST00000563226 HAND2P61296 217 aa22.69■■□□□ 1.22
SMPD3-203ENST00000563226 EXOSC10Q01780 885 aaKnown RBP22.69■■□□□ 1.22
SMPD3-203ENST00000563226 NARFQ9UHQ1 456 aa22.69■■□□□ 1.22
SMPD3-203ENST00000563226 FGAP02671 866 aa22.69■■□□□ 1.22
SMPD3-203ENST00000563226 HMGB1P09429 215 aaKnown RBP22.69■■□□□ 1.22
SMPD3-203ENST00000563226 SPATA5Q8NB90 893 aa22.69■■□□□ 1.22
SMPD3-203ENST00000563226 GTF3C6Q969F1 213 aa22.69■■□□□ 1.22
SMPD3-203ENST00000563226 PANK2Q9BZ23 570 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms