RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ATP2B4P23634 1241 aa20.39■□□□□ 0.85
VPS4A-202ENST00000562754 KCNJ4P48050 445 aa20.39■□□□□ 0.85
VPS4A-202ENST00000562754 TMX4Q9H1E5 349 aaPredicted RBP20.39■□□□□ 0.85
VPS4A-202ENST00000562754 IFIT2P09913 472 aaKnown RBP20.38■□□□□ 0.85
VPS4A-202ENST00000562754 SOGA3Q5TF21 947 aa20.38■□□□□ 0.85
VPS4A-202ENST00000562754 XAGE2Q96GT9 111 aa20.38■□□□□ 0.85
VPS4A-202ENST00000562754 NEUROD6Q96NK8 337 aa20.38■□□□□ 0.85
VPS4A-202ENST00000562754 IFIT1P09914 478 aaKnown RBP20.37■□□□□ 0.85
VPS4A-202ENST00000562754 TXNRD3Q86VQ6 643 aa20.37■□□□□ 0.85
VPS4A-202ENST00000562754 RTFDC1Q9BY42 306 aaPredicted RBP20.37■□□□□ 0.85
VPS4A-202ENST00000562754 MED23Q9ULK4 1368 aa20.36■□□□□ 0.85
VPS4A-202ENST00000562754 C6orf229H3BNL8 230 aa20.36■□□□□ 0.85
VPS4A-202ENST00000562754 C15orf52Q6ZUT6 534 aaKnown RBP20.36■□□□□ 0.85
VPS4A-202ENST00000562754 PLEKHM2Q8IWE5 1019 aa20.36■□□□□ 0.85
VPS4A-202ENST00000562754 RTKN2Q8IZC4 609 aa20.36■□□□□ 0.85
VPS4A-202ENST00000562754 NFKBIEO00221 500 aa20.35■□□□□ 0.85
VPS4A-202ENST00000562754 YBX3P16989 372 aaKnown RBP eCLIP20.35■□□□□ 0.85
VPS4A-202ENST00000562754 MX1P20591 662 aa20.35■□□□□ 0.85
VPS4A-202ENST00000562754 GRIPAP1Q4V328 841 aa20.35■□□□□ 0.85
VPS4A-202ENST00000562754 TSHZ3Q63HK5 1081 aa20.35■□□□□ 0.85
VPS4A-202ENST00000562754 PHKA1P46020 1223 aa20.34■□□□□ 0.85
VPS4A-202ENST00000562754 GYG1P46976 350 aa20.34■□□□□ 0.85
VPS4A-202ENST00000562754 PDE1AP54750 535 aa20.34■□□□□ 0.85
VPS4A-202ENST00000562754 PSMD1Q99460 953 aa20.34■□□□□ 0.85
VPS4A-202ENST00000562754 STAP2Q9UGK3 403 aa20.34■□□□□ 0.85
VPS4A-202ENST00000562754 AKAP11Q9UKA4 1901 aa20.33■□□□□ 0.85
VPS4A-202ENST00000562754 MYH13Q9UKX3 1938 aa20.33■□□□□ 0.85
VPS4A-202ENST00000562754 COL4A5P29400 1685 aa20.33■□□□□ 0.85
VPS4A-202ENST00000562754 RGS3P49796 1198 aa20.33■□□□□ 0.85
VPS4A-202ENST00000562754 FKBP4Q02790 459 aaKnown RBP eCLIP20.33■□□□□ 0.85
VPS4A-202ENST00000562754 FAM84BQ96KN1 310 aaPredicted RBP20.33■□□□□ 0.85
VPS4A-202ENST00000562754 BCAMP50895 628 aa20.32■□□□□ 0.84
VPS4A-202ENST00000562754 CCDC102BQ68D86 513 aa20.32■□□□□ 0.84
VPS4A-202ENST00000562754 FBXO33Q7Z6M2 555 aa20.32■□□□□ 0.84
VPS4A-202ENST00000562754 SUPT20HQ8NEM7 779 aa20.32■□□□□ 0.84
VPS4A-202ENST00000562754 ECHDC1Q9NTX5 307 aa20.32■□□□□ 0.84
VPS4A-202ENST00000562754 CHD4Q14839 1912 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 COL1A1P02452 1464 aaPredicted RBP20.31■□□□□ 0.84
VPS4A-202ENST00000562754 TTC41PQ6P2S7 1318 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 LTBP3Q9NS15 1303 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 RIMBP2O15034 1052 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 RASSF7Q02833 373 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 GORABQ5T7V8 394 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 PELP1Q8IZL8 1130 aaKnown RBP20.31■□□□□ 0.84
VPS4A-202ENST00000562754 PI4K2BQ8TCG2 481 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 EYA3Q99504 573 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 TAOK3Q9H2K8 898 aa20.31■□□□□ 0.84
VPS4A-202ENST00000562754 AOX1Q06278 1338 aa20.3■□□□□ 0.84
VPS4A-202ENST00000562754 ARID4AP29374 1257 aaPredicted RBP20.3■□□□□ 0.84
VPS4A-202ENST00000562754 KIAA2012Q0VF49 1180 aa20.3■□□□□ 0.84
VPS4A-202ENST00000562754 WASHC4Q2M389 1173 aa20.3■□□□□ 0.84
VPS4A-202ENST00000562754 GPATCH3Q96I76 525 aa20.3■□□□□ 0.84
VPS4A-202ENST00000562754 OSBPL3Q9H4L5 887 aa20.3■□□□□ 0.84
VPS4A-202ENST00000562754 ZNF277Q9NRM2 450 aaPredicted RBP20.3■□□□□ 0.84
VPS4A-202ENST00000562754 CCDC88AQ3V6T2 1871 aa20.3■□□□□ 0.84
VPS4A-202ENST00000562754 HIBADHP31937 336 aaKnown RBP20.29■□□□□ 0.84
VPS4A-202ENST00000562754 PRELPP51888 382 aa20.29■□□□□ 0.84
VPS4A-202ENST00000562754 SCARF1Q14162 830 aa20.29■□□□□ 0.84
VPS4A-202ENST00000562754 AOC3Q16853 763 aa20.29■□□□□ 0.84
VPS4A-202ENST00000562754 CAVIN4Q5BKX8 364 aa20.29■□□□□ 0.84
VPS4A-202ENST00000562754 CCDC158Q5M9N0 1113 aa20.29■□□□□ 0.84
VPS4A-202ENST00000562754 TTC39AQ5SRH9 613 aa20.29■□□□□ 0.84
VPS4A-202ENST00000562754 ZNF646O15015 1829 aaPredicted RBP20.29■□□□□ 0.84
VPS4A-202ENST00000562754 SBF1O95248 1867 aa20.28■□□□□ 0.84
VPS4A-202ENST00000562754 SCN9AQ15858 1988 aa20.28■□□□□ 0.84
VPS4A-202ENST00000562754 PPIP5K2O43314 1243 aa20.28■□□□□ 0.84
VPS4A-202ENST00000562754 ATP5JP18859 108 aa20.28■□□□□ 0.84
VPS4A-202ENST00000562754 ZNF804AQ7Z570 1209 aa20.28■□□□□ 0.84
VPS4A-202ENST00000562754 ZNF512BQ96KM6 892 aaPredicted RBP20.28■□□□□ 0.84
VPS4A-202ENST00000562754 ZC3H12CQ9C0D7 883 aaKnown RBP20.28■□□□□ 0.84
VPS4A-202ENST00000562754 IQSEC3Q9UPP2 1182 aaPredicted RBP20.28■□□□□ 0.84
VPS4A-202ENST00000562754 UQCRFS1P1P0C7P4 283 aa20.27■□□□□ 0.84
VPS4A-202ENST00000562754 IARSP41252 1262 aaKnown RBP20.27■□□□□ 0.84
VPS4A-202ENST00000562754 MCAMP43121 646 aa20.27■□□□□ 0.84
VPS4A-202ENST00000562754 RASGRF1Q13972 1273 aa20.27■□□□□ 0.84
VPS4A-202ENST00000562754 PI16Q6UXB8 463 aa20.27■□□□□ 0.84
VPS4A-202ENST00000562754 CD209Q9NNX6 404 aa20.27■□□□□ 0.84
VPS4A-202ENST00000562754 DICER1Q9UPY3 1922 aaKnown RBP20.26■□□□□ 0.83
VPS4A-202ENST00000562754 PSME4Q14997 1843 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 GLRX3O76003 335 aaKnown RBP20.26■□□□□ 0.83
VPS4A-202ENST00000562754 DOK7Q18PE1 504 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 ARHGAP27Q6ZUM4 889 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 VPS37DQ86XT2 251 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 TDRD7Q8NHU6 1098 aaKnown RBP20.26■□□□□ 0.83
VPS4A-202ENST00000562754 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.26■□□□□ 0.83
VPS4A-202ENST00000562754 COA1Q9GZY4 146 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 BOLA2Q9H3K6 86 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 DBNDD1Q9H9R9 158 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 SRCAPQ6ZRS2 3230 aa20.26■□□□□ 0.83
VPS4A-202ENST00000562754 ERC2O15083 957 aa20.25■□□□□ 0.83
VPS4A-202ENST00000562754 ZBTB22O15209 634 aa20.25■□□□□ 0.83
VPS4A-202ENST00000562754 IL1R1P14778 569 aa20.25■□□□□ 0.83
VPS4A-202ENST00000562754 GSPT1P15170 499 aaKnown RBP20.25■□□□□ 0.83
VPS4A-202ENST00000562754 TTC22Q5TAA0 569 aa20.25■□□□□ 0.83
VPS4A-202ENST00000562754 GNL3LQ9NVN8 582 aaKnown RBP20.25■□□□□ 0.83
VPS4A-202ENST00000562754 HMG20BQ9P0W2 317 aa20.25■□□□□ 0.83
VPS4A-202ENST00000562754 NDUFB9Q9Y6M9 179 aa20.25■□□□□ 0.83
VPS4A-202ENST00000562754 AK9Q5TCS8 1911 aa20.24■□□□□ 0.83
VPS4A-202ENST00000562754 GPR162Q16538 588 aa20.24■□□□□ 0.83
VPS4A-202ENST00000562754 LARGE2Q8N3Y3 721 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms