RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 POLD1P28340 1107 aa16.91■□□□□ 0.3
CLK3-209ENST00000562670 R3HDM1Q15032 1099 aaKnown RBP16.91■□□□□ 0.3
CLK3-209ENST00000562670 KBTBD3Q8NAB2 608 aa16.91■□□□□ 0.3
CLK3-209ENST00000562670 CNKSR1Q969H4 720 aa16.91■□□□□ 0.3
CLK3-209ENST00000562670 UPF2Q9HAU5 1272 aaKnown RBP16.91■□□□□ 0.3
CLK3-209ENST00000562670 PAG1Q9NWQ8 432 aa16.91■□□□□ 0.3
CLK3-209ENST00000562670 RAD50Q92878 1312 aa16.91■□□□□ 0.3
CLK3-209ENST00000562670 SEMA3EO15041 775 aa16.9■□□□□ 0.3
CLK3-209ENST00000562670 ATP2B4P23634 1241 aa16.9■□□□□ 0.3
CLK3-209ENST00000562670 PHKA1P46020 1223 aa16.9■□□□□ 0.3
CLK3-209ENST00000562670 KCNJ4P48050 445 aa16.9■□□□□ 0.3
CLK3-209ENST00000562670 SGIP1Q9BQI5 828 aa16.9■□□□□ 0.3
CLK3-209ENST00000562670 DOCK2Q92608 1830 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 SNED1Q8TER0 1413 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 MCAMP43121 646 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 TTF1Q15361 905 aaPredicted RBP16.89■□□□□ 0.29
CLK3-209ENST00000562670 LRRFIP1Q32MZ4 808 aaKnown RBP16.89■□□□□ 0.29
CLK3-209ENST00000562670 CAVIN4Q5BKX8 364 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 FBXO33Q7Z6M2 555 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 ESYT1Q9BSJ8 1104 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 SNRKQ9NRH2 765 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 GNL3LQ9NVN8 582 aaKnown RBP16.89■□□□□ 0.29
CLK3-209ENST00000562670 MED23Q9ULK4 1368 aa16.89■□□□□ 0.29
CLK3-209ENST00000562670 SNAP23O00161 211 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 IGSF3O75054 1194 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 REC8O95072 547 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 ZBTB7AO95365 584 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 SEC24BO95487 1268 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 MAP4K4O95819 1239 aaPredicted RBP16.88■□□□□ 0.29
CLK3-209ENST00000562670 SCARF1Q14162 830 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 CC2D2BQ6DHV5 1058 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 RUFY2Q8WXA3 655 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 DNAJC2Q99543 621 aaKnown RBP16.88■□□□□ 0.29
CLK3-209ENST00000562670 FSD1Q9BTV5 496 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 ANKIB1Q9P2G1 1089 aa16.88■□□□□ 0.29
CLK3-209ENST00000562670 TGFB2P61812 414 aa16.87■□□□□ 0.29
CLK3-209ENST00000562670 GPSM2P81274 684 aa16.87■□□□□ 0.29
CLK3-209ENST00000562670 RASGRF1Q13972 1273 aa16.87■□□□□ 0.29
CLK3-209ENST00000562670 GRIPAP1Q4V328 841 aa16.87■□□□□ 0.29
CLK3-209ENST00000562670 PRPF40BQ6NWY9 871 aaKnown RBP16.87■□□□□ 0.29
CLK3-209ENST00000562670 FAM84BQ96KN1 310 aaPredicted RBP16.87■□□□□ 0.29
CLK3-209ENST00000562670 DIAPH3Q9NSV4 1193 aa16.87■□□□□ 0.29
CLK3-209ENST00000562670 GGA1Q9UJY5 639 aa16.87■□□□□ 0.29
CLK3-209ENST00000562670 GOLIM4O00461 696 aa16.86■□□□□ 0.29
CLK3-209ENST00000562670 SGSM2O43147 1006 aa16.86■□□□□ 0.29
CLK3-209ENST00000562670 ZFYP08048 801 aaPredicted RBP16.86■□□□□ 0.29
CLK3-209ENST00000562670 SPATA5Q8NB90 893 aa16.86■□□□□ 0.29
CLK3-209ENST00000562670 TBC1D32Q96NH3 1257 aa16.86■□□□□ 0.29
CLK3-209ENST00000562670 HMG20BQ9P0W2 317 aa16.86■□□□□ 0.29
CLK3-209ENST00000562670 RBM19Q9Y4C8 960 aaKnown RBP16.86■□□□□ 0.29
CLK3-209ENST00000562670 CACNA1SQ13698 1873 aa16.86■□□□□ 0.29
CLK3-209ENST00000562670 MYH7P12883 1935 aa16.86■□□□□ 0.29
CLK3-209ENST00000562670 COL1A1P02452 1464 aaPredicted RBP16.86■□□□□ 0.29
CLK3-209ENST00000562670 SLX4Q8IY92 1834 aa16.85■□□□□ 0.29
CLK3-209ENST00000562670 BRCA1P38398 1863 aaKnown RBP16.85■□□□□ 0.29
CLK3-209ENST00000562670 UFL1O94874 794 aa16.85■□□□□ 0.29
CLK3-209ENST00000562670 ZAP70P43403 619 aa16.85■□□□□ 0.29
CLK3-209ENST00000562670 BCAMP50895 628 aa16.85■□□□□ 0.29
CLK3-209ENST00000562670 MFAP1P55081 439 aaKnown RBP16.85■□□□□ 0.29
CLK3-209ENST00000562670 TMED8Q6PL24 325 aaPredicted RBP16.85■□□□□ 0.29
CLK3-209ENST00000562670 ZNF622Q969S3 477 aaKnown RBP eCLIP16.85■□□□□ 0.293e-15■□□□□ 10.1
CLK3-209ENST00000562670 EDC3Q96F86 508 aaKnown RBP16.85■□□□□ 0.29
CLK3-209ENST00000562670 TMX4Q9H1E5 349 aaPredicted RBP16.85■□□□□ 0.29
CLK3-209ENST00000562670 DENND2AQ9ULE3 1009 aa16.85■□□□□ 0.29
CLK3-209ENST00000562670 MYH13Q9UKX3 1938 aa16.85■□□□□ 0.29
CLK3-209ENST00000562670 CYP2E1P05181 493 aaPredicted RBP16.84■□□□□ 0.29
CLK3-209ENST00000562670 CHRNA5P30532 468 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 HIBADHP31937 336 aaKnown RBP16.84■□□□□ 0.29
CLK3-209ENST00000562670 PTGER2P43116 358 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 GYG1P46976 350 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 RBM25P49756 843 aaKnown RBP16.84■□□□□ 0.29
CLK3-209ENST00000562670 FKBP4Q02790 459 aaKnown RBP eCLIP16.84■□□□□ 0.29
CLK3-209ENST00000562670 ZNF804AQ7Z570 1209 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 VPS37DQ86XT2 251 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 TBC1D16Q8TBP0 767 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 C7orf43Q8WVR3 580 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 NSFL1CQ9UNZ2 370 aaKnown RBP16.84■□□□□ 0.29
CLK3-209ENST00000562670 CD2APQ9Y5K6 639 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 MAST2Q6P0Q8 1798 aa16.84■□□□□ 0.29
CLK3-209ENST00000562670 KLRK1P26718 216 aa16.83■□□□□ 0.28
CLK3-209ENST00000562670 ZSCAN25Q6NSZ9 544 aa16.83■□□□□ 0.28
CLK3-209ENST00000562670 ILDR2Q71H61 639 aa16.83■□□□□ 0.28
CLK3-209ENST00000562670 RTFDC1Q9BY42 306 aaPredicted RBP16.83■□□□□ 0.28
CLK3-209ENST00000562670 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.83■□□□□ 0.287e-7■■□□□ 13.1
CLK3-209ENST00000562670 NDUFB9Q9Y6M9 179 aa16.83■□□□□ 0.28
CLK3-209ENST00000562670 SALL1Q9NSC2 1324 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 WTIPA6NIX2 430 aaPredicted RBP16.82■□□□□ 0.28
CLK3-209ENST00000562670 KCNA3P22001 575 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 PI16Q6UXB8 463 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 MPNDQ8N594 471 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 TTLL6Q8N841 843 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 ANTXR1Q9H6X2 564 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 HELLSQ9NRZ9 838 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 POLLQ9UGP5 575 aa16.82■□□□□ 0.28
CLK3-209ENST00000562670 ATF5Q9Y2D1 282 aaPredicted RBP16.82■□□□□ 0.28
CLK3-209ENST00000562670 RNF113AO15541 343 aaKnown RBP16.81■□□□□ 0.28
CLK3-209ENST00000562670 IL1R1P14778 569 aa16.81■□□□□ 0.28
CLK3-209ENST00000562670 NMIQ13287 307 aaPredicted RBP16.81■□□□□ 0.28
CLK3-209ENST00000562670 ZMYM1Q5SVZ6 1142 aa16.81■□□□□ 0.28
CLK3-209ENST00000562670 SOGA3Q5TF21 947 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms