RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 USP17L3A6NCW0 530 aa19.72■□□□□ 0.75
VPS39-203ENST00000561797 USP17L4A6NCW7 530 aa19.72■□□□□ 0.75
VPS39-203ENST00000561797 TRAF5O00463 557 aa19.72■□□□□ 0.75
VPS39-203ENST00000561797 RSBN1LQ6PCB5 846 aaPredicted RBP19.72■□□□□ 0.75
VPS39-203ENST00000561797 USP17L1Q7RTZ2 530 aa19.72■□□□□ 0.75
VPS39-203ENST00000561797 EGFRP00533 1210 aa19.71■□□□□ 0.75
VPS39-203ENST00000561797 JMYQ8N9B5 988 aa19.71■□□□□ 0.75
VPS39-203ENST00000561797 COA1Q9GZY4 146 aa19.71■□□□□ 0.75
VPS39-203ENST00000561797 PGAP2Q9UHJ9 254 aa19.71■□□□□ 0.75
VPS39-203ENST00000561797 BRPF1P55201 1214 aaPredicted RBP19.7■□□□□ 0.74
VPS39-203ENST00000561797 ANKRD44Q8N8A2 993 aa19.7■□□□□ 0.74
VPS39-203ENST00000561797 AGBL3Q8NEM8 1001 aa19.7■□□□□ 0.74
VPS39-203ENST00000561797 ZC3H15Q8WU90 426 aaKnown RBP19.7■□□□□ 0.74
VPS39-203ENST00000561797 GLIS2Q9BZE0 524 aaPredicted RBP19.7■□□□□ 0.74
VPS39-203ENST00000561797 PUS3Q9BZE2 481 aaKnown RBP19.7■□□□□ 0.74
VPS39-203ENST00000561797 API5Q9BZZ5 524 aaKnown RBP19.7■□□□□ 0.74
VPS39-203ENST00000561797 RABL6Q3YEC7 729 aaPredicted RBP19.69■□□□□ 0.74
VPS39-203ENST00000561797 MXD3Q9BW11 206 aa19.69■□□□□ 0.74
VPS39-203ENST00000561797 KIF4BQ2VIQ3 1234 aa19.68■□□□□ 0.74
VPS39-203ENST00000561797 ABT1Q9ULW3 272 aaKnown RBP19.68■□□□□ 0.74
VPS39-203ENST00000561797 CDC37L1Q7L3B6 337 aa19.67■□□□□ 0.74
VPS39-203ENST00000561797 USP48Q86UV5 1035 aa19.67■□□□□ 0.74
VPS39-203ENST00000561797 GMLQ99445 158 aa19.67■□□□□ 0.74
VPS39-203ENST00000561797 CNTNAP1P78357 1384 aa19.67■□□□□ 0.74
VPS39-203ENST00000561797 ZNF609O15014 1411 aa19.67■□□□□ 0.74
VPS39-203ENST00000561797 BCAR3O75815 825 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 USP17L8P0C7I0 530 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 GTF2IP78347 998 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 DACT2Q5SW24 774 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 CST9Q5W186 159 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 TTLL5Q6EMB2 1281 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 KLHDC4Q8TBB5 520 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 ZNF408Q9H9D4 720 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 CD209Q9NNX6 404 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 KIF16BQ96L93 1317 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 IRS2Q9Y4H2 1338 aa19.66■□□□□ 0.74
VPS39-203ENST00000561797 UBTFL1P0CB47 393 aaPredicted RBP19.65■□□□□ 0.74
VPS39-203ENST00000561797 ZNF280AP59817 542 aaPredicted RBP19.65■□□□□ 0.74
VPS39-203ENST00000561797 DEFB115Q30KQ5 88 aa19.65■□□□□ 0.74
VPS39-203ENST00000561797 STRIP1Q5VSL9 837 aa19.65■□□□□ 0.74
VPS39-203ENST00000561797 C15orf52Q6ZUT6 534 aaKnown RBP19.65■□□□□ 0.74
VPS39-203ENST00000561797 FRAT1Q92837 279 aaPredicted RBP19.65■□□□□ 0.74
VPS39-203ENST00000561797 DCPSQ96C86 337 aaKnown RBP19.65■□□□□ 0.74
VPS39-203ENST00000561797 RIPOR2Q9Y4F9 1068 aa19.65■□□□□ 0.74
VPS39-203ENST00000561797 CELF2O95319 508 aaKnown RBP19.64■□□□□ 0.73
VPS39-203ENST00000561797 LRRC24Q50LG9 513 aa19.64■□□□□ 0.73
VPS39-203ENST00000561797 DLK2Q6UY11 383 aa19.64■□□□□ 0.73
VPS39-203ENST00000561797 ZNF804AQ7Z570 1209 aa19.64■□□□□ 0.73
VPS39-203ENST00000561797 ARHGAP45Q92619 1136 aa19.64■□□□□ 0.73
VPS39-203ENST00000561797 ASTN2O75129 1339 aaPredicted RBP19.64■□□□□ 0.73
VPS39-203ENST00000561797 MYH13Q9UKX3 1938 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 MROH5Q6ZUA9 1318 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 MYO3BQ8WXR4 1341 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 VEGFBP49765 207 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 SCARF1Q14162 830 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 KRT26Q7Z3Y9 468 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 MYOZ2Q9NPC6 264 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 GGA3Q9NZ52 723 aa19.63■□□□□ 0.73
VPS39-203ENST00000561797 RASSF10A6NK89 507 aa19.62■□□□□ 0.73
VPS39-203ENST00000561797 IPO8O15397 1037 aaKnown RBP19.62■□□□□ 0.73
VPS39-203ENST00000561797 UBE4AQ14139 1066 aa19.62■□□□□ 0.73
VPS39-203ENST00000561797 METTL24Q5JXM2 366 aa19.62■□□□□ 0.73
VPS39-203ENST00000561797 PAXIP1Q6ZW49 1069 aaPredicted RBP19.62■□□□□ 0.73
VPS39-203ENST00000561797 TNNQ9UQP3 1299 aa19.62■□□□□ 0.73
VPS39-203ENST00000561797 ECM29Q5VYK3 1845 aa19.62■□□□□ 0.73
VPS39-203ENST00000561797 ADM5C9JUS6 153 aa19.61■□□□□ 0.73
VPS39-203ENST00000561797 INTS3Q68E01 1043 aaKnown RBP19.61■□□□□ 0.73
VPS39-203ENST00000561797 KIAA0825Q8IV33 1275 aa19.61■□□□□ 0.73
VPS39-203ENST00000561797 OGFOD1Q8N543 542 aa19.61■□□□□ 0.73
VPS39-203ENST00000561797 MEIS3Q99687 375 aa19.61■□□□□ 0.73
VPS39-203ENST00000561797 LRRFIP2Q9Y608 721 aaKnown RBP19.61■□□□□ 0.73
VPS39-203ENST00000561797 ZBED9Q6R2W3 1325 aa19.6■□□□□ 0.73
VPS39-203ENST00000561797 IL1R1P14778 569 aa19.6■□□□□ 0.73
VPS39-203ENST00000561797 GYG1P46976 350 aa19.6■□□□□ 0.73
VPS39-203ENST00000561797 GRM1Q13255 1194 aa19.6■□□□□ 0.73
VPS39-203ENST00000561797 ANGEL2Q5VTE6 544 aaKnown RBP19.6■□□□□ 0.73
VPS39-203ENST00000561797 CLUAP1Q96AJ1 413 aa19.6■□□□□ 0.73
VPS39-203ENST00000561797 JAG2Q9Y219 1238 aa19.6■□□□□ 0.73
VPS39-203ENST00000561797 HSPA1AP0DMV8 641 aaKnown RBP19.59■□□□□ 0.73
VPS39-203ENST00000561797 HSPA1BP0DMV9 641 aaKnown RBP19.59■□□□□ 0.73
VPS39-203ENST00000561797 TRIM27P14373 513 aa19.59■□□□□ 0.73
VPS39-203ENST00000561797 RFX5P48382 616 aaPredicted RBP19.59■□□□□ 0.73
VPS39-203ENST00000561797 ATF7IPQ6VMQ6 1270 aa19.59■□□□□ 0.73
VPS39-203ENST00000561797 SULF1Q8IWU6 871 aa19.59■□□□□ 0.73
VPS39-203ENST00000561797 HDAC9Q9UKV0 1011 aa19.59■□□□□ 0.73
VPS39-203ENST00000561797 HDAC5Q9UQL6 1122 aa19.59■□□□□ 0.73
VPS39-203ENST00000561797 TLL2Q9Y6L7 1015 aa19.59■□□□□ 0.73
VPS39-203ENST00000561797 ARAP2Q8WZ64 1704 aa19.59■□□□□ 0.73
VPS39-203ENST00000561797 WDR33Q9C0J8 1336 aaKnown RBP19.58■□□□□ 0.73
VPS39-203ENST00000561797 HIBADHP31937 336 aaKnown RBP19.58■□□□□ 0.72
VPS39-203ENST00000561797 NBPF9Q3BBW0 867 aa19.58■□□□□ 0.72
VPS39-203ENST00000561797 CERS5Q8N5B7 392 aa19.58■□□□□ 0.72
VPS39-203ENST00000561797 FAM84BQ96KN1 310 aaPredicted RBP19.58■□□□□ 0.72
VPS39-203ENST00000561797 SCAF8Q9UPN6 1271 aaKnown RBP19.58■□□□□ 0.72
VPS39-203ENST00000561797 F8W031 263 aaPredicted RBP19.57■□□□□ 0.72
VPS39-203ENST00000561797 EYA2O00167 538 aa19.57■□□□□ 0.72
VPS39-203ENST00000561797 SASH1O94885 1247 aa19.57■□□□□ 0.72
VPS39-203ENST00000561797 PDE8BO95263 885 aa19.57■□□□□ 0.72
VPS39-203ENST00000561797 PTPN12Q05209 780 aaKnown RBP19.57■□□□□ 0.72
VPS39-203ENST00000561797 CYP4F22Q6NT55 531 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms