RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 MED23Q9ULK4 1368 aa13.05□□□□□ -0.32
CLK3-205ENST00000561673 CACNA1FO60840 1977 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 ALDH1L1O75891 902 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 KLRK1P26718 216 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 ZNF280AP59817 542 aaPredicted RBP13.04□□□□□ -0.32
CLK3-205ENST00000561673 CHRNDQ07001 517 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 KIF4BQ2VIQ3 1234 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 CYP4F22Q6NT55 531 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 KRT26Q7Z3Y9 468 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 SAPCD2Q86UD0 394 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 CDCA7LQ96GN5 454 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 ZNF408Q9H9D4 720 aa13.04□□□□□ -0.32
CLK3-205ENST00000561673 SCN9AQ15858 1988 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 FOXN1O15353 648 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 TAF5LO75529 589 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 SSH1Q8WYL5 1049 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 DCPSQ96C86 337 aaKnown RBP13.03□□□□□ -0.32
CLK3-205ENST00000561673 CAPNS2Q96L46 248 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 MXD3Q9BW11 206 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 COA1Q9GZY4 146 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 WBP1LQ9NX94 342 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 MYH3P11055 1940 aa13.03□□□□□ -0.32
CLK3-205ENST00000561673 ADM5C9JUS6 153 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 CCER2I3L3R5 266 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 SNAP23O00161 211 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 USP17L8P0C7I0 530 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 KCNJ4P48050 445 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 GRM1Q13255 1194 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 SCARF1Q14162 830 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 CCDC57Q2TAC2 916 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 DACT2Q5SW24 774 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 PAXIP1Q6ZW49 1069 aaPredicted RBP13.02□□□□□ -0.33
CLK3-205ENST00000561673 TRMT2AQ8IZ69 625 aaKnown RBP13.02□□□□□ -0.33
CLK3-205ENST00000561673 HELBQ8NG08 1087 aaPredicted RBP13.02□□□□□ -0.33
CLK3-205ENST00000561673 ZNF594Q96JF6 807 aaPredicted RBP13.02□□□□□ -0.33
CLK3-205ENST00000561673 MYOZ2Q9NPC6 264 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 ASTN2O75129 1339 aaPredicted RBP13.02□□□□□ -0.33
CLK3-205ENST00000561673 ZNF609O15014 1411 aa13.02□□□□□ -0.33
CLK3-205ENST00000561673 NBPF7P0C2Y1 421 aaPredicted RBP13.01□□□□□ -0.33
CLK3-205ENST00000561673 ECE1P42892 770 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 STRIP1Q5VSL9 837 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 TTLL5Q6EMB2 1281 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 FBXW7Q969H0 707 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 AIDAQ96BJ3 306 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 KAZALD1Q96I82 304 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 SUCLG2Q96I99 432 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 GGA3Q9NZ52 723 aa13.01□□□□□ -0.33
CLK3-205ENST00000561673 SPEF2Q9C093 1822 aa13□□□□□ -0.33
CLK3-205ENST00000561673 UTYO14607 1347 aa13□□□□□ -0.33
CLK3-205ENST00000561673 PTPRCP08575 1304 aa13□□□□□ -0.33
CLK3-205ENST00000561673 IRS2Q9Y4H2 1338 aa13□□□□□ -0.33
CLK3-205ENST00000561673 AOC2O75106 756 aa13□□□□□ -0.33
CLK3-205ENST00000561673 CTCFP49711 727 aaPredicted RBP13□□□□□ -0.33
CLK3-205ENST00000561673 MAP2K1Q02750 393 aaPredicted RBP13□□□□□ -0.33
CLK3-205ENST00000561673 TAF7LQ5H9L4 462 aa13□□□□□ -0.33
CLK3-205ENST00000561673 LDHAL6AQ6ZMR3 332 aa13□□□□□ -0.33
CLK3-205ENST00000561673 HHIPL1Q96JK4 782 aa13□□□□□ -0.33
CLK3-205ENST00000561673 PLIN1O60240 522 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 GTF2IP78347 998 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 ALDH1L2Q3SY69 923 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 ANGEL2Q5VTE6 544 aaKnown RBP12.99□□□□□ -0.33
CLK3-205ENST00000561673 C15orf52Q6ZUT6 534 aaKnown RBP12.99□□□□□ -0.33
CLK3-205ENST00000561673 SULF1Q8IWU6 871 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 TNS4Q8IZW8 715 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 CD209Q9NNX6 404 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 CNNM1Q9NRU3 951 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 TRPM7Q96QT4 1865 aa12.99□□□□□ -0.33
CLK3-205ENST00000561673 MYO3BQ8WXR4 1341 aa12.98□□□□□ -0.33
CLK3-205ENST00000561673 MAP2K2P36507 400 aa12.98□□□□□ -0.33
CLK3-205ENST00000561673 HUNKP57058 714 aa12.98□□□□□ -0.33
CLK3-205ENST00000561673 NBPF9Q3BBW0 867 aa12.98□□□□□ -0.33
CLK3-205ENST00000561673 OGFOD1Q8N543 542 aa12.98□□□□□ -0.33
CLK3-205ENST00000561673 BICC1Q9H694 974 aaKnown RBP12.98□□□□□ -0.33
CLK3-205ENST00000561673 SCAF8Q9UPN6 1271 aaKnown RBP12.98□□□□□ -0.33
CLK3-205ENST00000561673 LBX1P52954 281 aa12.97□□□□□ -0.33
CLK3-205ENST00000561673 RABL6Q3YEC7 729 aaPredicted RBP12.97□□□□□ -0.33
CLK3-205ENST00000561673 C2orf69Q8N8R5 385 aa12.97□□□□□ -0.33
CLK3-205ENST00000561673 CDCA5Q96FF9 252 aa12.97□□□□□ -0.33
CLK3-205ENST00000561673 PUS3Q9BZE2 481 aaKnown RBP12.97□□□□□ -0.33
CLK3-205ENST00000561673 USP44Q9H0E7 712 aa12.97□□□□□ -0.33
CLK3-205ENST00000561673 GBA2Q9HCG7 927 aaPredicted RBP12.97□□□□□ -0.33
CLK3-205ENST00000561673 PRDM10Q9NQV6 1147 aa12.97□□□□□ -0.33
CLK3-205ENST00000561673 SMC4Q9NTJ3 1288 aa12.97□□□□□ -0.33
CLK3-205ENST00000561673 PITPNM2Q9BZ72 1349 aa12.96□□□□□ -0.33
CLK3-205ENST00000561673 WNT10BO00744 389 aa12.96□□□□□ -0.33
CLK3-205ENST00000561673 HSPA8P11142 646 aaKnown RBP12.96□□□□□ -0.33
CLK3-205ENST00000561673 IL1R1P14778 569 aa12.96□□□□□ -0.33
CLK3-205ENST00000561673 MMP14P50281 582 aa12.96□□□□□ -0.33
CLK3-205ENST00000561673 KIAA0825Q8IV33 1275 aa12.96□□□□□ -0.33
CLK3-205ENST00000561673 ANKRD44Q8N8A2 993 aa12.96□□□□□ -0.33
CLK3-205ENST00000561673 RIPOR2Q9Y4F9 1068 aa12.96□□□□□ -0.33
CLK3-205ENST00000561673 PSME4Q14997 1843 aa12.95□□□□□ -0.34
CLK3-205ENST00000561673 CT47B1P0C2W7 299 aaPredicted RBP12.95□□□□□ -0.34
CLK3-205ENST00000561673 RGMBQ6NW40 437 aa12.95□□□□□ -0.34
CLK3-205ENST00000561673 ZNF804AQ7Z570 1209 aa12.95□□□□□ -0.34
CLK3-205ENST00000561673 CERS5Q8N5B7 392 aa12.95□□□□□ -0.34
CLK3-205ENST00000561673 ZIC5Q96T25 663 aa12.95□□□□□ -0.34
CLK3-205ENST00000561673 BEGAINQ9BUH8 593 aa12.95□□□□□ -0.34
CLK3-205ENST00000561673 NOB1Q9ULX3 412 aaKnown RBP12.95□□□□□ -0.34
CLK3-205ENST00000561673 FAM155AB1AL88 458 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms