RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 ZKSCAN2Q63HK3 967 aa16.24■□□□□ 0.19
CTDSPL2-209ENST00000560620 PUS3Q9BZE2 481 aaKnown RBP16.24■□□□□ 0.19
CTDSPL2-209ENST00000560620 SCN9AQ15858 1988 aa16.24■□□□□ 0.19
CTDSPL2-209ENST00000560620 TBC1D10BQ4KMP7 808 aaPredicted RBP16.23■□□□□ 0.19
CTDSPL2-209ENST00000560620 METTL24Q5JXM2 366 aa16.23■□□□□ 0.19
CTDSPL2-209ENST00000560620 INTS3Q68E01 1043 aaKnown RBP16.23■□□□□ 0.19
CTDSPL2-209ENST00000560620 RSBN1LQ6PCB5 846 aaPredicted RBP16.23■□□□□ 0.19
CTDSPL2-209ENST00000560620 SAMD7Q7Z3H4 446 aa16.23■□□□□ 0.19
CTDSPL2-209ENST00000560620 ZNF804AQ7Z570 1209 aa16.23■□□□□ 0.19
CTDSPL2-209ENST00000560620 KLHDC4Q8TBB5 520 aa16.23■□□□□ 0.19
CTDSPL2-209ENST00000560620 GNAI3P08754 354 aa16.22■□□□□ 0.19
CTDSPL2-209ENST00000560620 FTSJ3Q8IY81 847 aaKnown RBP16.22■□□□□ 0.19
CTDSPL2-209ENST00000560620 TRPM4Q8TD43 1214 aa16.22■□□□□ 0.19
CTDSPL2-209ENST00000560620 MEIS3Q99687 375 aa16.22■□□□□ 0.19
CTDSPL2-209ENST00000560620 TNNQ9UQP3 1299 aa16.22■□□□□ 0.19
CTDSPL2-209ENST00000560620 LRRFIP2Q9Y608 721 aaKnown RBP16.22■□□□□ 0.19
CTDSPL2-209ENST00000560620 ADAMTSL1Q8N6G6 1762 aa16.22■□□□□ 0.19
CTDSPL2-209ENST00000560620 MROH5Q6ZUA9 1318 aa16.21■□□□□ 0.19
CTDSPL2-209ENST00000560620 ITGBL1O95965 494 aaPredicted RBP16.21■□□□□ 0.19
CTDSPL2-209ENST00000560620 GTF2IP78347 998 aa16.21■□□□□ 0.19
CTDSPL2-209ENST00000560620 LRRC24Q50LG9 513 aa16.21■□□□□ 0.19
CTDSPL2-209ENST00000560620 TTLL5Q6EMB2 1281 aa16.21■□□□□ 0.19
CTDSPL2-209ENST00000560620 AGBL3Q8NEM8 1001 aa16.21■□□□□ 0.19
CTDSPL2-209ENST00000560620 A0A1B0GUL6 1792 aa16.21■□□□□ 0.18
CTDSPL2-209ENST00000560620 USP17L8P0C7I0 530 aa16.2■□□□□ 0.18
CTDSPL2-209ENST00000560620 HIRAP54198 1017 aaPredicted RBP16.2■□□□□ 0.18
CTDSPL2-209ENST00000560620 KIF4BQ2VIQ3 1234 aa16.2■□□□□ 0.18
CTDSPL2-209ENST00000560620 OGFOD1Q8N543 542 aa16.2■□□□□ 0.18
CTDSPL2-209ENST00000560620 SIL1Q9H173 461 aa16.2■□□□□ 0.18
CTDSPL2-209ENST00000560620 CD209Q9NNX6 404 aa16.2■□□□□ 0.18
CTDSPL2-209ENST00000560620 RIPOR2Q9Y4F9 1068 aa16.2■□□□□ 0.18
CTDSPL2-209ENST00000560620 PASKQ96RG2 1323 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 TMEM88BA6NKF7 163 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 UBE4AQ14139 1066 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 STRIP1Q5VSL9 837 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 VPS37DQ86XT2 251 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 ZC3H15Q8WU90 426 aaKnown RBP16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 MXD3Q9BW11 206 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 CREBZFQ9NS37 354 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 PSME4Q14997 1843 aa16.19■□□□□ 0.18
CTDSPL2-209ENST00000560620 TRAF5O00463 557 aa16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 EGFRP00533 1210 aa16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 DACT2Q5SW24 774 aa16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 C15orf52Q6ZUT6 534 aaKnown RBP16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 TMEM57Q8N5G2 664 aa16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 DCPSQ96C86 337 aaKnown RBP16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 ZNF408Q9H9D4 720 aa16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 ABT1Q9ULW3 272 aaKnown RBP16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 MYO3BQ8WXR4 1341 aa16.18■□□□□ 0.18
CTDSPL2-209ENST00000560620 FRAT2O75474 233 aaPredicted RBP16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 PDE8BO95263 885 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 GYG1P46976 350 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 FMR1Q06787 632 aaKnown RBP eCLIP16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 CAVIN4Q5BKX8 364 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 CDC37L1Q7L3B6 337 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 ITPRIPQ8IWB1 547 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 DZIP1LQ8IYY4 767 aaKnown RBP16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 DNAJC5GQ8N7S2 189 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 KLRG1Q96E93 195 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 GLIS2Q9BZE0 524 aaPredicted RBP16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 MYOZ2Q9NPC6 264 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 JAG2Q9Y219 1238 aa16.17■□□□□ 0.18
CTDSPL2-209ENST00000560620 EYA2O00167 538 aa16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 GNAI2P04899 355 aa16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 HIBADHP31937 336 aaKnown RBP16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 PTPN12Q05209 780 aaKnown RBP16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 KIAA0825Q8IV33 1275 aa16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 GMLQ99445 158 aa16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 MKRN1Q9UHC7 482 aaKnown RBP16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 HDAC9Q9UKV0 1011 aa16.16■□□□□ 0.18
CTDSPL2-209ENST00000560620 SRGAP3O43295 1099 aa16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 IFIT1P09914 478 aaKnown RBP16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 RFX5P48382 616 aaPredicted RBP16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 SCARF1Q14162 830 aa16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 PUM3Q15397 648 aaKnown RBP16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 KRT26Q7Z3Y9 468 aa16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 USP48Q86UV5 1035 aa16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 GGA3Q9NZ52 723 aa16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 PGAP2Q9UHJ9 254 aa16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 IRS2Q9Y4H2 1338 aa16.15■□□□□ 0.18
CTDSPL2-209ENST00000560620 F8W031 263 aaPredicted RBP16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 CELF2O95319 508 aaKnown RBP16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 IL1R1P14778 569 aa16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 ZNF280AP59817 542 aaPredicted RBP16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 PAXIP1Q6ZW49 1069 aaPredicted RBP16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 SULF1Q8IWU6 871 aa16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 FAM84BQ96KN1 310 aaPredicted RBP16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 CEP126Q9P2H0 1117 aa16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 IQSEC3Q9UPP2 1182 aaPredicted RBP16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 PA2G4Q9UQ80 394 aaKnown RBP16.14■□□□□ 0.17
CTDSPL2-209ENST00000560620 ZNF609O15014 1411 aa16.13■□□□□ 0.17
CTDSPL2-209ENST00000560620 SLC5A1P13866 664 aa16.13■□□□□ 0.17
CTDSPL2-209ENST00000560620 ANGEL2Q5VTE6 544 aaKnown RBP16.13■□□□□ 0.17
CTDSPL2-209ENST00000560620 CIAO1O76071 339 aa16.12■□□□□ 0.17
CTDSPL2-209ENST00000560620 SASH1O94885 1247 aa16.12■□□□□ 0.17
CTDSPL2-209ENST00000560620 IL15P40933 162 aaPredicted RBP16.12■□□□□ 0.17
CTDSPL2-209ENST00000560620 CHAF1AQ13111 956 aaPredicted RBP16.12■□□□□ 0.17
CTDSPL2-209ENST00000560620 ATG9AQ7Z3C6 839 aa16.12■□□□□ 0.17
CTDSPL2-209ENST00000560620 VGLL2Q8N8G2 317 aa16.12■□□□□ 0.17
CTDSPL2-209ENST00000560620 YTHDC1Q96MU7 727 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms