RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 CHMP3Q9Y3E7 222 aa11.56□□□□□ -0.56
RTF1-206ENST00000560447 RGL2O15211 777 aa11.55□□□□□ -0.56
RTF1-206ENST00000560447 IFIT1P09914 478 aaKnown RBP11.55□□□□□ -0.56
RTF1-206ENST00000560447 IFIT5Q13325 482 aaKnown RBP11.55□□□□□ -0.56
RTF1-206ENST00000560447 CCDC158Q5M9N0 1113 aa11.55□□□□□ -0.56
RTF1-206ENST00000560447 DPY19L2Q6NUT2 758 aa11.55□□□□□ -0.56
RTF1-206ENST00000560447 CAVIN1Q6NZI2 390 aaKnown RBP11.55□□□□□ -0.56
RTF1-206ENST00000560447 LRSAM1Q6UWE0 723 aa11.55□□□□□ -0.56
RTF1-206ENST00000560447 GPT2Q8TD30 523 aa11.55□□□□□ -0.56
RTF1-206ENST00000560447 PPP1R9BQ96SB3 815 aa11.55□□□□□ -0.56
RTF1-206ENST00000560447 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.55□□□□□ -0.56
RTF1-206ENST00000560447 ASAP1Q9ULH1 1129 aa11.55□□□□□ -0.56
RTF1-206ENST00000560447 BCORQ6W2J9 1755 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 A0A1B0GUL7 405 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 RNF113AO15541 343 aaKnown RBP11.54□□□□□ -0.56
RTF1-206ENST00000560447 GJB2P29033 226 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 ZSCAN25Q6NSZ9 544 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 NOL8Q76FK4 1167 aaKnown RBP11.54□□□□□ -0.56
RTF1-206ENST00000560447 ZNF589Q86UQ0 364 aaPredicted RBP11.54□□□□□ -0.56
RTF1-206ENST00000560447 NLRP10Q86W26 655 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 GAS2L3Q86XJ1 694 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 FBXL16Q8N461 479 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 NEUROD6Q96NK8 337 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 NEK1Q96PY6 1258 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 DNAJC2Q99543 621 aaKnown RBP11.54□□□□□ -0.56
RTF1-206ENST00000560447 LLPHQ9BRT6 129 aaKnown RBP11.54□□□□□ -0.56
RTF1-206ENST00000560447 AKAP11Q9UKA4 1901 aa11.54□□□□□ -0.56
RTF1-206ENST00000560447 DDX60Q8IY21 1712 aaKnown RBP11.54□□□□□ -0.56
RTF1-206ENST00000560447 MYH15Q9Y2K3 1946 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 COL5A3P25940 1745 aaPredicted RBP11.53□□□□□ -0.56
RTF1-206ENST00000560447 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.53□□□□□ -0.56
RTF1-206ENST00000560447 NASPP49321 788 aaPredicted RBP11.53□□□□□ -0.56
RTF1-206ENST00000560447 UBE2HP62256 183 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 ME3Q16798 604 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 HS1BP3Q53T59 392 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 CCDC83Q8IWF9 413 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 EFCAB3Q8N7B9 438 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 RGS22Q8NE09 1264 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 JARID2Q92833 1246 aaPredicted RBP11.53□□□□□ -0.56
RTF1-206ENST00000560447 ZFP91Q96JP5 570 aaPredicted RBP11.53□□□□□ -0.56
RTF1-206ENST00000560447 CTNNA3Q9UI47 895 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 KIF3AQ9Y496 699 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 ELP1O95163 1332 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 SPATA31A1Q5TZJ5 1347 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 RTL9Q8NET4 1388 aa11.53□□□□□ -0.56
RTF1-206ENST00000560447 ATRNO75882 1429 aa11.52□□□□□ -0.56
RTF1-206ENST00000560447 RIC1Q4ADV7 1423 aa11.52□□□□□ -0.56
RTF1-206ENST00000560447 DOCK2Q92608 1830 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 ANKRD18BA2A2Z9 1011 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 PDE8AO60658 829 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 LRRC24Q50LG9 513 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 TAF7LQ5H9L4 462 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 BARGINQ6ZT62 677 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 DDX46Q7L014 1031 aaKnown RBP11.52□□□□□ -0.57
RTF1-206ENST00000560447 FAM184AQ8NB25 1140 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 AGXT2Q9BYV1 514 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 TPCN1Q9ULQ1 816 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 MTMR6Q9Y217 621 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 WDR19Q8NEZ3 1342 aa11.52□□□□□ -0.57
RTF1-206ENST00000560447 GOLIM4O00461 696 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 LARGE1O95461 756 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 CTSWP56202 376 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 TOB2Q14106 344 aaPredicted RBP11.51□□□□□ -0.57
RTF1-206ENST00000560447 TTF1Q15361 905 aaPredicted RBP11.51□□□□□ -0.57
RTF1-206ENST00000560447 PARP10Q53GL7 1025 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 TTC39AQ5SRH9 613 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 DHX32Q7L7V1 743 aaKnown RBP11.51□□□□□ -0.57
RTF1-206ENST00000560447 ZNF34Q8IZ26 560 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 TTLL11Q8NHH1 800 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 SMARCC1Q92922 1105 aaPredicted RBP11.51□□□□□ -0.57
RTF1-206ENST00000560447 GTF3C6Q969F1 213 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 TMEM63CQ9P1W3 806 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 RIPOR2Q9Y4F9 1068 aa11.51□□□□□ -0.57
RTF1-206ENST00000560447 SLIT2O94813 1529 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 CYP21A2P08686 494 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 UQCRFS1P1P0C7P4 283 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 EIF5P55010 431 aaKnown RBP11.5□□□□□ -0.57
RTF1-206ENST00000560447 TIMM10P62072 90 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 HMGN5P82970 282 aaKnown RBP11.5□□□□□ -0.57
RTF1-206ENST00000560447 ST3GAL1Q11201 340 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 DDB1Q16531 1140 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 ATP2B3Q16720 1220 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 UVSSAQ2YD98 709 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 CCDC183Q5T5S1 534 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 GORABQ5T7V8 394 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 USP48Q86UV5 1035 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 APPBP2Q92624 585 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 TRIM44Q96DX7 344 aaPredicted RBP11.5□□□□□ -0.57
RTF1-206ENST00000560447 EDC3Q96F86 508 aaKnown RBP11.5□□□□□ -0.57
RTF1-206ENST00000560447 XAGE2Q96GT9 111 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 PANK2Q9BZ23 570 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.5□□□□□ -0.57
RTF1-206ENST00000560447 MAST3O60307 1309 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 MROH5Q6ZUA9 1318 aa11.5□□□□□ -0.57
RTF1-206ENST00000560447 IRS4O14654 1257 aaPredicted RBP11.49□□□□□ -0.57
RTF1-206ENST00000560447 PFKFB2O60825 505 aa11.49□□□□□ -0.57
RTF1-206ENST00000560447 HSPD1P10809 573 aaKnown RBP11.49□□□□□ -0.57
RTF1-206ENST00000560447 CPA1P15085 419 aa11.49□□□□□ -0.57
RTF1-206ENST00000560447 EVCP57679 992 aa11.49□□□□□ -0.57
RTF1-206ENST00000560447 KRT85P78386 507 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms