RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 SUCLG2Q96I99 432 aa22.54■■□□□ 1.2
HDDC3-205ENST00000559898 IRS2Q9Y4H2 1338 aa22.54■■□□□ 1.2
HDDC3-205ENST00000559898 AOC2O75106 756 aa22.53■■□□□ 1.2
HDDC3-205ENST00000559898 PAXIP1Q6ZW49 1069 aaPredicted RBP22.53■■□□□ 1.2
HDDC3-205ENST00000559898 ZNF804BA4D1E1 1349 aa22.53■■□□□ 1.2
HDDC3-205ENST00000559898 ANKRD18BA2A2Z9 1011 aa22.52■■□□□ 1.2
HDDC3-205ENST00000559898 USP17L3A6NCW0 530 aa22.52■■□□□ 1.2
HDDC3-205ENST00000559898 USP17L4A6NCW7 530 aa22.52■■□□□ 1.2
HDDC3-205ENST00000559898 NBPF7P0C2Y1 421 aaPredicted RBP22.52■■□□□ 1.2
HDDC3-205ENST00000559898 CDC37L1Q7L3B6 337 aa22.52■■□□□ 1.2
HDDC3-205ENST00000559898 USP17L1Q7RTZ2 530 aa22.52■■□□□ 1.2
HDDC3-205ENST00000559898 CAPNS2Q96L46 248 aa22.52■■□□□ 1.2
HDDC3-205ENST00000559898 MPHOSPH8Q99549 860 aa22.52■■□□□ 1.2
HDDC3-205ENST00000559898 E9PSI1 815 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 ZNF280AP59817 542 aaPredicted RBP22.51■■□□□ 1.19
HDDC3-205ENST00000559898 DACT2Q5SW24 774 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 PODNQ7Z5L7 613 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 SAPCD2Q86UD0 394 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 FBXW7Q969H0 707 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 SRCIN1Q9C0H9 1055 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 WBP1LQ9NX94 342 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 GGA3Q9NZ52 723 aa22.51■■□□□ 1.19
HDDC3-205ENST00000559898 ZNF609O15014 1411 aa22.5■■□□□ 1.19
HDDC3-205ENST00000559898 KRT26Q7Z3Y9 468 aa22.5■■□□□ 1.19
HDDC3-205ENST00000559898 AGBL3Q8NEM8 1001 aa22.5■■□□□ 1.19
HDDC3-205ENST00000559898 C9orf78Q9NZ63 289 aaPredicted RBP22.5■■□□□ 1.19
HDDC3-205ENST00000559898 LEMD3Q9Y2U8 911 aa22.5■■□□□ 1.19
HDDC3-205ENST00000559898 ALDH1L1O75891 902 aa22.49■■□□□ 1.19
HDDC3-205ENST00000559898 IFIT5Q13325 482 aaKnown RBP22.49■■□□□ 1.19
HDDC3-205ENST00000559898 SCARF1Q14162 830 aa22.49■■□□□ 1.19
HDDC3-205ENST00000559898 TRMT2AQ8IZ69 625 aaKnown RBP22.49■■□□□ 1.19
HDDC3-205ENST00000559898 ZIC5Q96T25 663 aa22.49■■□□□ 1.19
HDDC3-205ENST00000559898 PUS3Q9BZE2 481 aaKnown RBP22.49■■□□□ 1.19
HDDC3-205ENST00000559898 ANGEL2Q5VTE6 544 aaKnown RBP22.48■■□□□ 1.19
HDDC3-205ENST00000559898 ANKRD2Q9GZV1 360 aa22.48■■□□□ 1.19
HDDC3-205ENST00000559898 PLIN1O60240 522 aa22.47■■□□□ 1.19
HDDC3-205ENST00000559898 USP17L8P0C7I0 530 aa22.47■■□□□ 1.19
HDDC3-205ENST00000559898 COA1Q9GZY4 146 aa22.47■■□□□ 1.19
HDDC3-205ENST00000559898 MYOZ2Q9NPC6 264 aa22.47■■□□□ 1.19
HDDC3-205ENST00000559898 NBPF9Q3BBW0 867 aa22.46■■□□□ 1.19
HDDC3-205ENST00000559898 DCPSQ96C86 337 aaKnown RBP22.46■■□□□ 1.19
HDDC3-205ENST00000559898 GTF2IP78347 998 aa22.45■■□□□ 1.18
HDDC3-205ENST00000559898 TNS4Q8IZW8 715 aa22.45■■□□□ 1.18
HDDC3-205ENST00000559898 ANKRD44Q8N8A2 993 aa22.45■■□□□ 1.18
HDDC3-205ENST00000559898 BICC1Q9H694 974 aaKnown RBP22.45■■□□□ 1.18
HDDC3-205ENST00000559898 CD209Q9NNX6 404 aa22.45■■□□□ 1.18
HDDC3-205ENST00000559898 JAG2Q9Y219 1238 aa22.45■■□□□ 1.18
HDDC3-205ENST00000559898 UTYO14607 1347 aa22.45■■□□□ 1.18
HDDC3-205ENST00000559898 CCER2I3L3R5 266 aa22.44■■□□□ 1.18
HDDC3-205ENST00000559898 HSPA8P11142 646 aaKnown RBP22.44■■□□□ 1.18
HDDC3-205ENST00000559898 KCNJ4P48050 445 aa22.44■■□□□ 1.18
HDDC3-205ENST00000559898 LBX1P52954 281 aa22.44■■□□□ 1.18
HDDC3-205ENST00000559898 PRAMEF18Q5VWM3 479 aa22.44■■□□□ 1.18
HDDC3-205ENST00000559898 CERS5Q8N5B7 392 aa22.44■■□□□ 1.18
HDDC3-205ENST00000559898 TSKSQ9UJT2 592 aa22.44■■□□□ 1.18
HDDC3-205ENST00000559898 PCDHAC2Q9Y5I4 1007 aa22.44■■□□□ 1.18
HDDC3-205ENST00000559898 CAPN15O75808 1086 aa22.43■■□□□ 1.18
HDDC3-205ENST00000559898 CCDC57Q2TAC2 916 aa22.43■■□□□ 1.18
HDDC3-205ENST00000559898 STRIP1Q5VSL9 837 aa22.43■■□□□ 1.18
HDDC3-205ENST00000559898 TTLL5Q6EMB2 1281 aa22.43■■□□□ 1.18
HDDC3-205ENST00000559898 LDHAL6AQ6ZMR3 332 aa22.43■■□□□ 1.18
HDDC3-205ENST00000559898 CDCA5Q96FF9 252 aa22.43■■□□□ 1.18
HDDC3-205ENST00000559898 SASH1O94885 1247 aa22.42■■□□□ 1.18
HDDC3-205ENST00000559898 HUNKP57058 714 aa22.42■■□□□ 1.18
HDDC3-205ENST00000559898 KIAA0825Q8IV33 1275 aa22.42■■□□□ 1.18
HDDC3-205ENST00000559898 KLHDC4Q8TBB5 520 aa22.42■■□□□ 1.18
HDDC3-205ENST00000559898 USP44Q9H0E7 712 aa22.42■■□□□ 1.18
HDDC3-205ENST00000559898 PTPRCP08575 1304 aa22.41■■□□□ 1.18
HDDC3-205ENST00000559898 ECE1P42892 770 aa22.41■■□□□ 1.18
HDDC3-205ENST00000559898 TAF7LQ5H9L4 462 aa22.41■■□□□ 1.18
HDDC3-205ENST00000559898 MOB2Q70IA6 237 aa22.41■■□□□ 1.18
HDDC3-205ENST00000559898 GBA2Q9HCG7 927 aaPredicted RBP22.41■■□□□ 1.18
HDDC3-205ENST00000559898 CNNM1Q9NRU3 951 aa22.41■■□□□ 1.18
HDDC3-205ENST00000559898 AOX1Q06278 1338 aa22.4■■□□□ 1.18
HDDC3-205ENST00000559898 CTCFP49711 727 aaPredicted RBP22.4■■□□□ 1.18
HDDC3-205ENST00000559898 LRRC24Q50LG9 513 aa22.4■■□□□ 1.18
HDDC3-205ENST00000559898 C15orf52Q6ZUT6 534 aaKnown RBP22.4■■□□□ 1.18
HDDC3-205ENST00000559898 SULF1Q8IWU6 871 aa22.4■■□□□ 1.18
HDDC3-205ENST00000559898 AIDAQ96BJ3 306 aa22.4■■□□□ 1.18
HDDC3-205ENST00000559898 SMC4Q9NTJ3 1288 aa22.4■■□□□ 1.18
HDDC3-205ENST00000559898 WNT10BO00744 389 aa22.39■■□□□ 1.17
HDDC3-205ENST00000559898 RABL6Q3YEC7 729 aaPredicted RBP22.39■■□□□ 1.17
HDDC3-205ENST00000559898 FAM155AB1AL88 458 aaPredicted RBP22.38■■□□□ 1.17
HDDC3-205ENST00000559898 ALDH1L2Q3SY69 923 aa22.38■■□□□ 1.17
HDDC3-205ENST00000559898 HHIPL1Q96JK4 782 aa22.38■■□□□ 1.17
HDDC3-205ENST00000559898 RIPOR2Q9Y4F9 1068 aa22.38■■□□□ 1.17
HDDC3-205ENST00000559898 F8W031 263 aaPredicted RBP22.37■■□□□ 1.17
HDDC3-205ENST00000559898 IL1R1P14778 569 aa22.37■■□□□ 1.17
HDDC3-205ENST00000559898 GYG1P46976 350 aa22.37■■□□□ 1.17
HDDC3-205ENST00000559898 MAP2K1Q02750 393 aaPredicted RBP22.37■■□□□ 1.17
HDDC3-205ENST00000559898 ZBED3Q96IU2 234 aaPredicted RBP22.37■■□□□ 1.17
HDDC3-205ENST00000559898 NOB1Q9ULX3 412 aaKnown RBP22.37■■□□□ 1.17
HDDC3-205ENST00000559898 MIER1Q8N108 512 aa22.36■■□□□ 1.17
HDDC3-205ENST00000559898 PRDM10Q9NQV6 1147 aa22.36■■□□□ 1.17
HDDC3-205ENST00000559898 MAP2K2P36507 400 aa22.35■■□□□ 1.17
HDDC3-205ENST00000559898 RGMBQ6NW40 437 aa22.35■■□□□ 1.17
HDDC3-205ENST00000559898 C2orf69Q8N8R5 385 aa22.35■■□□□ 1.17
HDDC3-205ENST00000559898 TNNQ9UQP3 1299 aa22.35■■□□□ 1.17
HDDC3-205ENST00000559898 MYO3BQ8WXR4 1341 aa22.34■■□□□ 1.17
HDDC3-205ENST00000559898 PITPNM2Q9BZ72 1349 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms