RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 ZSWIM6Q9HCJ5 1215 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 PAG1Q9NWQ8 432 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 IARSP41252 1262 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 EPS15P42566 896 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 ENOX2Q16206 610 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 FAM107BQ9H098 131 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 ZBTB3Q9H5J0 574 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 IFIT3O14879 490 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 PRC1O43663 620 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 COPS6Q7L5N1 327 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 DHX32Q7L7V1 743 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 CACTINQ8WUQ7 758 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 NACAP1Q9BZK3 213 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 TANGO6Q9C0B7 1094 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 XPO4Q9C0E2 1151 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 POTEB2H3BUK9 544 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 FANCCQ00597 558 aa8.16□□□□□ -1.1
USP3-210ENST00000559192 NAA30Q147X3 362 aaPredicted RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 SMARCC1Q92922 1105 aaPredicted RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 SRRTQ9BXP5 876 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.16□□□□□ -1.1
USP3-210ENST00000559192 NCBP1Q09161 790 aaKnown RBP8.15□□□□□ -1.1
USP3-210ENST00000559192 ARID5BQ14865 1188 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 PTPN21Q16825 1174 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 ODF2Q5BJF6 829 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 TMEM67Q5HYA8 995 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 NEK11Q8NG66 645 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 SUCLG2Q96I99 432 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 LGR6Q9HBX8 967 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 ZFYVE16Q7Z3T8 1539 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 LRRC7Q96NW7 1537 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 OAS2P29728 719 aaKnown RBP8.15□□□□□ -1.1
USP3-210ENST00000559192 HOXC9P31274 260 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 NF2P35240 595 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 STX17P56962 302 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 TAX1BP1Q86VP1 789 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 IQGAP1P46940 1657 aa8.15□□□□□ -1.1
USP3-210ENST00000559192 CEP152O94986 1710 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 STIM1Q13586 685 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 SPECC1Q5M775 1068 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 IQCEQ6IPM2 695 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 SSH3Q8TE77 659 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 BAG1Q99933 345 aaPredicted RBP8.15□□□□□ -1.11
USP3-210ENST00000559192 FTOQ9C0B1 505 aaKnown RBP eCLIP8.15□□□□□ -1.11
USP3-210ENST00000559192 MATR3P43243 847 aaKnown RBP eCLIP8.15□□□□□ -1.116e-9■■□□□ 14.1
USP3-210ENST00000559192 MAP9Q49MG5 647 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 ZNF569Q5MCW4 686 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 STAP2Q9UGK3 403 aa8.15□□□□□ -1.11
USP3-210ENST00000559192 MINDY4BA8MYZ0 360 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 CEBPAP49715 358 aaPredicted RBP8.14□□□□□ -1.11
USP3-210ENST00000559192 ANKRD13DQ6ZTN6 518 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 AMOTL1Q8IY63 956 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 KCNH5Q8NCM2 988 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 NAPBQ9H115 298 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 KCNF1Q9H3M0 494 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.14□□□□□ -1.11
USP3-210ENST00000559192 TTC21AQ8NDW8 1320 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 SEC31AO94979 1220 aaKnown RBP8.14□□□□□ -1.11
USP3-210ENST00000559192 GOLGA8FQ08AF8 430 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 GOLGA8DPQ0D2H9 430 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 LMBR1LQ6UX01 489 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 AKAP2Q9Y2D5 859 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 CTAGE15A4D2H0 777 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 YEATS4O95619 227 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 CCDC175P0C221 793 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 CTAGE8P0CG41 777 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 CTAGE6Q86UF2 777 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 CTAGE4Q8IX94 777 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 CAPZA3Q96KX2 299 aa8.14□□□□□ -1.11
USP3-210ENST00000559192 SEC62Q99442 399 aaKnown RBP8.14□□□□□ -1.11
USP3-210ENST00000559192 GLI2P10070 1586 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 MYL5Q02045 173 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 CDK5RAP3Q96JB5 506 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 PHF8Q9UPP1 1060 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 RPAP1Q9BWH6 1393 aaPredicted RBP8.13□□□□□ -1.11
USP3-210ENST00000559192 GOLGA6L10A0A0M3HER8 536 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 CTAGE9A4FU28 777 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 KCNQ3O43525 872 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 ERLIN2O94905 339 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 NLRP12P59046 1061 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 LINS1Q8NG48 757 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 TDRD7Q8NHU6 1098 aaKnown RBP8.13□□□□□ -1.11
USP3-210ENST00000559192 ANKRD24Q8TF21 1146 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 PPP1R13BQ96KQ4 1090 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 USP28Q96RU2 1077 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 TM6SF1Q9BZW5 370 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 RASSF4Q9H2L5 321 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 TLR7Q9NYK1 1049 aaKnown RBP8.13□□□□□ -1.11
USP3-210ENST00000559192 MED14O60244 1454 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 AKAP4Q5JQC9 854 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 RNF187Q5TA31 235 aaPredicted RBP8.13□□□□□ -1.11
USP3-210ENST00000559192 TMEM87AQ8NBN3 555 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 DHX58Q96C10 678 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 DBNDD2Q9BQY9 259 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 JADE2Q9NQC1 790 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 STRN4Q9NRL3 753 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 IMPACTQ9P2X3 320 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 N4BP3O15049 544 aa8.13□□□□□ -1.11
USP3-210ENST00000559192 RNF113AO15541 343 aaKnown RBP8.13□□□□□ -1.11
USP3-210ENST00000559192 ZNF202O95125 648 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms