RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 PUM3Q15397 648 aaKnown RBP18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 EXOC6Q8TAG9 804 aa18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 CEP126Q9P2H0 1117 aa18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 NOP58Q9Y2X3 529 aaKnown RBP18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.41■□□□□ 0.54
VIPAS39-210ENST00000557466 ZNF609O15014 1411 aa18.4■□□□□ 0.54
VIPAS39-210ENST00000557466 EIF6P56537 245 aaKnown RBP18.4■□□□□ 0.54
VIPAS39-210ENST00000557466 TFCP2Q12800 502 aa18.4■□□□□ 0.54
VIPAS39-210ENST00000557466 ZNF526Q8TF50 670 aaPredicted RBP18.4■□□□□ 0.54
VIPAS39-210ENST00000557466 PCDHB15Q9Y5E8 787 aa18.4■□□□□ 0.54
VIPAS39-210ENST00000557466 GLTPD2A6NH11 291 aa18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 G3V3G9 751 aa18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 SASH1O94885 1247 aa18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 CXCL9Q07325 125 aa18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 OS9Q13438 667 aaPredicted RBP18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 ATP2B3Q16720 1220 aa18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 DCAF8Q5TAQ9 597 aa18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 EXOC6BQ9Y2D4 811 aa18.39■□□□□ 0.53
VIPAS39-210ENST00000557466 SCN4AP35499 1836 aa18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 RAD17O75943 681 aa18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 DDNO94850 711 aaPredicted RBP18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 GYG1P46976 350 aa18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 ZNF784Q8NCA9 323 aaPredicted RBP18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 LPIN2Q92539 896 aa18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 COA1Q9GZY4 146 aa18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 KCNQ5Q9NR82 932 aa18.38■□□□□ 0.53
VIPAS39-210ENST00000557466 IFIT1P09914 478 aaKnown RBP18.37■□□□□ 0.53
VIPAS39-210ENST00000557466 SLC5A1P13866 664 aa18.37■□□□□ 0.53
VIPAS39-210ENST00000557466 CIAPIN1Q6FI81 312 aa18.37■□□□□ 0.53
VIPAS39-210ENST00000557466 DPY19L2Q6NUT2 758 aa18.37■□□□□ 0.53
VIPAS39-210ENST00000557466 ZNF804AQ7Z570 1209 aa18.37■□□□□ 0.53
VIPAS39-210ENST00000557466 CD209Q9NNX6 404 aa18.37■□□□□ 0.53
VIPAS39-210ENST00000557466 KDM2BQ8NHM5 1336 aa18.37■□□□□ 0.53
VIPAS39-210ENST00000557466 CENPBP07199 599 aaPredicted RBP18.36■□□□□ 0.53
VIPAS39-210ENST00000557466 PODNQ7Z5L7 613 aa18.36■□□□□ 0.53
VIPAS39-210ENST00000557466 GPC2Q8N158 579 aa18.36■□□□□ 0.53
VIPAS39-210ENST00000557466 FAM84BQ96KN1 310 aaPredicted RBP18.36■□□□□ 0.53
VIPAS39-210ENST00000557466 GJA3Q9Y6H8 435 aa18.36■□□□□ 0.53
VIPAS39-210ENST00000557466 A0A1B0GUL7 405 aa18.35■□□□□ 0.53
VIPAS39-210ENST00000557466 PSMD14O00487 310 aa18.35■□□□□ 0.53
VIPAS39-210ENST00000557466 ADORA1P30542 326 aa18.35■□□□□ 0.53
VIPAS39-210ENST00000557466 AAMPQ13685 434 aa18.35■□□□□ 0.53
VIPAS39-210ENST00000557466 IL1R1P14778 569 aa18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 HIBADHP31937 336 aaKnown RBP18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 HSP90AB4PQ58FF6 505 aa18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 FBXO33Q7Z6M2 555 aa18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 ERC1Q8IUD2 1116 aa18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 GPBP1L1Q9HC44 474 aaPredicted RBP18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 NMRK2Q9NPI5 230 aa18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 AKAP2Q9Y2D5 859 aa18.34■□□□□ 0.53
VIPAS39-210ENST00000557466 BCAMP50895 628 aa18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 TIMM10P62072 90 aa18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 TNIP1Q15025 636 aa18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 TNNI3KQ59H18 835 aa18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 CAVIN4Q5BKX8 364 aa18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 L3MBTL3Q96JM7 780 aaPredicted RBP18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 GPR108Q9NPR9 543 aa18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 FPGT-TNNI3KV9GXZ4 949 aa18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 COL1A1P02452 1464 aaPredicted RBP18.33■□□□□ 0.52
VIPAS39-210ENST00000557466 USP17L3A6NCW0 530 aa18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 USP17L4A6NCW7 530 aa18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 APBB1O00213 710 aa18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 USP17L1Q7RTZ2 530 aa18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 VPS37DQ86XT2 251 aa18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 TDRD7Q8NHU6 1098 aaKnown RBP18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 RHPN1Q8TCX5 695 aa18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 FBXW7Q969H0 707 aa18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 IQSEC3Q9UPP2 1182 aaPredicted RBP18.32■□□□□ 0.52
VIPAS39-210ENST00000557466 POTECB2RU33 542 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 RAB11FIP3O75154 756 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 VIL1P09327 827 aaKnown RBP18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 PHKA1P46020 1223 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 GMPSP49915 693 aaPredicted RBP18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 SCNN1DP51172 638 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 GTF2IP78347 998 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 KIF1BPQ96EK5 621 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 XAGE2Q96GT9 111 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 NEUROD6Q96NK8 337 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 MXD3Q9BW11 206 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 RRAGCQ9HB90 399 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 IL1RAPL2Q9NP60 686 aa18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 ZBTB12Q9Y330 459 aaPredicted RBP18.31■□□□□ 0.52
VIPAS39-210ENST00000557466 DACT2Q5SW24 774 aa18.3■□□□□ 0.52
VIPAS39-210ENST00000557466 STRIP1Q5VSL9 837 aa18.3■□□□□ 0.52
VIPAS39-210ENST00000557466 RSBN1LQ6PCB5 846 aaPredicted RBP18.3■□□□□ 0.52
VIPAS39-210ENST00000557466 DCTPP1Q9H773 170 aa18.3■□□□□ 0.52
VIPAS39-210ENST00000557466 JAG2Q9Y219 1238 aa18.3■□□□□ 0.52
VIPAS39-210ENST00000557466 FAM205AQ6ZU69 1335 aa18.29■□□□□ 0.52
VIPAS39-210ENST00000557466 CCDC102BQ68D86 513 aa18.29■□□□□ 0.52
VIPAS39-210ENST00000557466 EAF2Q96CJ1 260 aaPredicted RBP18.29■□□□□ 0.52
VIPAS39-210ENST00000557466 DBNDD2Q9BQY9 259 aa18.29■□□□□ 0.52
VIPAS39-210ENST00000557466 TLR7Q9NYK1 1049 aaKnown RBP18.29■□□□□ 0.52
VIPAS39-210ENST00000557466 ADAMTSL1Q8N6G6 1762 aa18.29■□□□□ 0.52
VIPAS39-210ENST00000557466 AKAP11Q9UKA4 1901 aa18.29■□□□□ 0.52
VIPAS39-210ENST00000557466 SHTN1A0MZ66 631 aa18.28■□□□□ 0.52
VIPAS39-210ENST00000557466 KIF3CO14782 793 aa18.28■□□□□ 0.52
VIPAS39-210ENST00000557466 HDAC1Q13547 482 aaPredicted RBP18.28■□□□□ 0.52
VIPAS39-210ENST00000557466 TTLL5Q6EMB2 1281 aa18.28■□□□□ 0.52
VIPAS39-210ENST00000557466 GPRC5DQ9NZD1 345 aa18.28■□□□□ 0.52
VIPAS39-210ENST00000557466 HACL1Q9UJ83 578 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms