RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 USP17L8P0C7I0 530 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 ITGA6P23229 1130 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 EXOSC9Q06265 439 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 NOGQ13253 232 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 SCARF1Q14162 830 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 RGMBQ6NW40 437 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 LINS1Q8NG48 757 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 MPHOSPH8Q99549 860 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 MYOZ2Q9NPC6 264 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 LEMD3Q9Y2U8 911 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 ZNF646O15015 1829 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 ASTN2O75129 1339 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 CASP8AP2Q9UKL3 1982 aa14.13□□□□□ -0.15
CCDC88C-213ENST00000557455 ANGEL2Q5VTE6 544 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-213ENST00000557455 GMLQ99445 158 aa14.12□□□□□ -0.15
CCDC88C-213ENST00000557455 AKAP11Q9UKA4 1901 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 CSF1RP07333 972 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 ZNF157P51786 506 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 CASP7P55210 303 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 FAM161AQ3B820 660 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 FBXW7Q969H0 707 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 CCDC102AQ96A19 550 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 CDCA5Q96FF9 252 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 ABHD8Q96I13 439 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 ZIC5Q96T25 663 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 ANKRD2Q9GZV1 360 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 COA1Q9GZY4 146 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 ZNF804BA4D1E1 1349 aa14.11□□□□□ -0.15
CCDC88C-213ENST00000557455 FAM9BQ8IZU0 186 aa14.1□□□□□ -0.15
CCDC88C-213ENST00000557455 OGFOD1Q8N543 542 aa14.1□□□□□ -0.15
CCDC88C-213ENST00000557455 MYO3BQ8WXR4 1341 aa14.1□□□□□ -0.15
CCDC88C-213ENST00000557455 PITPNM2Q9BZ72 1349 aa14.1□□□□□ -0.15
CCDC88C-213ENST00000557455 ANKRD18BA2A2Z9 1011 aa14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 FAM155AB1AL88 458 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 KCNJ4P48050 445 aa14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 DACT2Q5SW24 774 aa14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 STRIP1Q5VSL9 837 aa14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 TXNRD3Q86VQ6 643 aa14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 MXD3Q9BW11 206 aa14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 SPINK5Q9NQ38 1064 aaPredicted RBP14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 A0A1B0GUL6 1792 aa14.09□□□□□ -0.15
CCDC88C-213ENST00000557455 F6X3S4 739 aa14.08□□□□□ -0.16
CCDC88C-213ENST00000557455 CHRNDQ07001 517 aa14.08□□□□□ -0.16
CCDC88C-213ENST00000557455 TTLL5Q6EMB2 1281 aa14.08□□□□□ -0.16
CCDC88C-213ENST00000557455 CHMP3Q9Y3E7 222 aa14.08□□□□□ -0.16
CCDC88C-213ENST00000557455 PAPPA2Q9BXP8 1791 aa14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 KLRK1P26718 216 aa14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 FKBP1BP68106 108 aa14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 KIF23Q02241 960 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 IFIT5Q13325 482 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 NBPF9Q3BBW0 867 aa14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 BEND3Q5T5X7 828 aa14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 SCAF8Q9UPN6 1271 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-213ENST00000557455 SLC10A3P09131 477 aa14.06□□□□□ -0.16
CCDC88C-213ENST00000557455 MMP14P50281 582 aa14.06□□□□□ -0.16
CCDC88C-213ENST00000557455 FOXO4P98177 505 aa14.06□□□□□ -0.16
CCDC88C-213ENST00000557455 HDAC9Q9UKV0 1011 aa14.06□□□□□ -0.16
CCDC88C-213ENST00000557455 WNT10BO00744 389 aa14.05□□□□□ -0.16
CCDC88C-213ENST00000557455 TAF5LO75529 589 aa14.05□□□□□ -0.16
CCDC88C-213ENST00000557455 GTF2IP78347 998 aa14.05□□□□□ -0.16
CCDC88C-213ENST00000557455 KIAA0825Q8IV33 1275 aa14.05□□□□□ -0.16
CCDC88C-213ENST00000557455 HELBQ8NG08 1087 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-213ENST00000557455 SAGE1Q9NXZ1 904 aa14.05□□□□□ -0.16
CCDC88C-213ENST00000557455 CCDC85CA6NKD9 419 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 GRM8O00222 908 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 SASH1O94885 1247 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 CCDC57Q2TAC2 916 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 TAF7LQ5H9L4 462 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 PRAMEF18Q5VWM3 479 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 SLC4A10Q6U841 1118 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 LMBR1LQ6UX01 489 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 RASAL3Q86YV0 1011 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 CSRNP1Q96S65 589 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 CD209Q9NNX6 404 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 C9orf78Q9NZ63 289 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 ECM29Q5VYK3 1845 aa14.04□□□□□ -0.16
CCDC88C-213ENST00000557455 SNAP23O00161 211 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 TRPA1O75762 1119 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 NF2P35240 595 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 DGKZQ13574 1117 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 TTLL12Q14166 644 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 EPHA10Q5JZY3 1008 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 C15orf52Q6ZUT6 534 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 MOB2Q70IA6 237 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 MCOLN1Q9GZU1 580 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 RNF186Q9NXI6 227 aa14.03□□□□□ -0.16
CCDC88C-213ENST00000557455 IRS2Q9Y4H2 1338 aa14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 UBE2Q2LH0YL09 131 aa14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 ALDH1L1O75891 902 aa14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 LDHAL6AQ6ZMR3 332 aa14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 ZNF804AQ7Z570 1209 aa14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 ZNF594Q96JF6 807 aaPredicted RBP14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 SRCIN1Q9C0H9 1055 aa14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 CNNM1Q9NRU3 951 aa14.02□□□□□ -0.17
CCDC88C-213ENST00000557455 PLIN1O60240 522 aa14.01□□□□□ -0.17
CCDC88C-213ENST00000557455 APOBEC3FQ8IUX4 373 aaKnown RBP14.01□□□□□ -0.17
CCDC88C-213ENST00000557455 IL1R1P14778 569 aa14□□□□□ -0.17
CCDC88C-213ENST00000557455 DLGAP5Q15398 846 aa14□□□□□ -0.17
CCDC88C-213ENST00000557455 ZBED3Q96IU2 234 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms