RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 PTPN18Q99952 460 aa12.62□□□□□ -0.39
NEDD1-211ENST00000557454 LAMB4A4D0S4 1761 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 G3V3G9 751 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 EVI5O60447 810 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 GJA5P36382 358 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 DCAF8Q5TAQ9 597 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 MCM10Q7L590 875 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 ZC3H12CQ9C0D7 883 aaKnown RBP12.61□□□□□ -0.39
NEDD1-211ENST00000557454 ARHGAP39Q9C0H5 1083 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 TAF1P21675 1872 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 RPTORQ8N122 1335 aa12.61□□□□□ -0.39
NEDD1-211ENST00000557454 WNT10BO00744 389 aa12.6□□□□□ -0.39
NEDD1-211ENST00000557454 SASH1O94885 1247 aa12.6□□□□□ -0.39
NEDD1-211ENST00000557454 FARP2O94887 1054 aaPredicted RBP12.6□□□□□ -0.39
NEDD1-211ENST00000557454 GJA8P48165 433 aa12.6□□□□□ -0.39
NEDD1-211ENST00000557454 C1QBPQ07021 282 aaKnown RBP12.6□□□□□ -0.39
NEDD1-211ENST00000557454 NKX2-3Q8TAU0 364 aa12.6□□□□□ -0.39
NEDD1-211ENST00000557454 ANKRD36CQ5JPF3 1778 aa12.6□□□□□ -0.39
NEDD1-211ENST00000557454 COL4A1P02462 1669 aa12.6□□□□□ -0.39
NEDD1-211ENST00000557454 U2SURPO15042 1029 aaKnown RBP12.59□□□□□ -0.39
NEDD1-211ENST00000557454 BCAMP50895 628 aa12.59□□□□□ -0.39
NEDD1-211ENST00000557454 LRIT3Q3SXY7 679 aa12.59□□□□□ -0.39
NEDD1-211ENST00000557454 PHACTR3Q96KR7 559 aa12.59□□□□□ -0.39
NEDD1-211ENST00000557454 GDF15Q99988 308 aa12.59□□□□□ -0.39
NEDD1-211ENST00000557454 SSC5DA1L4H1 1573 aa12.58□□□□□ -0.4
NEDD1-211ENST00000557454 UFL1O94874 794 aa12.58□□□□□ -0.4
NEDD1-211ENST00000557454 FAM122AQ96E09 287 aa12.58□□□□□ -0.4
NEDD1-211ENST00000557454 LAMB1P07942 1786 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 TESPA1A2RU30 521 aaPredicted RBP12.57□□□□□ -0.4
NEDD1-211ENST00000557454 GJB1P08034 283 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 BMP8BP34820 402 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 DCTN1Q14203 1278 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 TAF1CQ15572 869 aaPredicted RBP12.57□□□□□ -0.4
NEDD1-211ENST00000557454 MAP3K11Q16584 847 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 NLRP10Q86W26 655 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 APOBEC3FQ8IUX4 373 aaKnown RBP12.57□□□□□ -0.4
NEDD1-211ENST00000557454 ZNF428Q96B54 188 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 GUCD1Q96NT3 240 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 MIS18AQ9NYP9 233 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 TRMT112Q9UI30 125 aaKnown RBP12.57□□□□□ -0.4
NEDD1-211ENST00000557454 ZSWIM8A7E2V4 1837 aa12.57□□□□□ -0.4
NEDD1-211ENST00000557454 ZNF646O15015 1829 aaPredicted RBP12.56□□□□□ -0.4
NEDD1-211ENST00000557454 USP17L3A6NCW0 530 aa12.56□□□□□ -0.4
NEDD1-211ENST00000557454 USP17L4A6NCW7 530 aa12.56□□□□□ -0.4
NEDD1-211ENST00000557454 ECM2O94769 699 aaPredicted RBP12.56□□□□□ -0.4
NEDD1-211ENST00000557454 CCL5P13501 91 aa12.56□□□□□ -0.4
NEDD1-211ENST00000557454 USP17L1Q7RTZ2 530 aa12.56□□□□□ -0.4
NEDD1-211ENST00000557454 RTF1Q92541 710 aaKnown RBP12.56□□□□□ -0.4
NEDD1-211ENST00000557454 MXD3Q9BW11 206 aa12.56□□□□□ -0.4
NEDD1-211ENST00000557454 ZFYVE28Q9HCC9 887 aa12.56□□□□□ -0.4
NEDD1-211ENST00000557454 COL3A1P02461 1466 aaPredicted RBP12.56□□□□□ -0.4
NEDD1-211ENST00000557454 SH3TC1Q8TE82 1336 aa12.56□□□□□ -0.4
NEDD1-211ENST00000557454 LAMA2P24043 3122 aaKnown RBP12.55□□□□□ -0.4
NEDD1-211ENST00000557454 PRKAR2BP31323 418 aa12.55□□□□□ -0.4
NEDD1-211ENST00000557454 LACTBP83111 547 aaPredicted RBP12.55□□□□□ -0.4
NEDD1-211ENST00000557454 U2AF1L4Q8WU68 220 aaKnown RBP12.55□□□□□ -0.4
NEDD1-211ENST00000557454 BRI3BPQ8WY22 251 aa12.55□□□□□ -0.4
NEDD1-211ENST00000557454 RNF208Q9H0X6 261 aa12.55□□□□□ -0.4
NEDD1-211ENST00000557454 KNSTRNQ9Y448 316 aa12.55□□□□□ -0.4
NEDD1-211ENST00000557454 PPP1R12BO60237 982 aaPredicted RBP12.54□□□□□ -0.4
NEDD1-211ENST00000557454 KIF22Q14807 665 aa12.54□□□□□ -0.4
NEDD1-211ENST00000557454 TDHQ8IZJ6 230 aa12.54□□□□□ -0.4
NEDD1-211ENST00000557454 OGFOD1Q8N543 542 aa12.54□□□□□ -0.4
NEDD1-211ENST00000557454 MS4A4AQ96JQ5 239 aa12.54□□□□□ -0.4
NEDD1-211ENST00000557454 THUMPD2Q9BTF0 503 aaKnown RBP12.54□□□□□ -0.4
NEDD1-211ENST00000557454 PODXL2Q9NZ53 605 aa12.54□□□□□ -0.4
NEDD1-211ENST00000557454 GGA1Q9UJY5 639 aa12.54□□□□□ -0.4
NEDD1-211ENST00000557454 ZMYND8Q9ULU4 1186 aaPredicted RBP12.54□□□□□ -0.4
NEDD1-211ENST00000557454 IRS2Q9Y4H2 1338 aa12.54□□□□□ -0.4
NEDD1-211ENST00000557454 ABCB7O75027 752 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 GRK4P32298 578 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 PRMT2P55345 433 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 AMER1Q5JTC6 1135 aaPredicted RBP12.53□□□□□ -0.4
NEDD1-211ENST00000557454 FAM43AQ8N2R8 423 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 FAM161BQ96MY7 647 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 DEFB129Q9H1M3 183 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 ANKIB1Q9P2G1 1089 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 PSME4Q14997 1843 aa12.53□□□□□ -0.4
NEDD1-211ENST00000557454 COL1A1P02452 1464 aaPredicted RBP12.53□□□□□ -0.4
NEDD1-211ENST00000557454 CDH23Q9H251 3354 aa12.52□□□□□ -0.4
NEDD1-211ENST00000557454 POLA2Q14181 598 aa12.52□□□□□ -0.41
NEDD1-211ENST00000557454 TAF7Q15545 349 aaPredicted RBP12.52□□□□□ -0.41
NEDD1-211ENST00000557454 LRP10Q7Z4F1 713 aa12.52□□□□□ -0.41
NEDD1-211ENST00000557454 ELP3Q9H9T3 547 aa12.52□□□□□ -0.41
NEDD1-211ENST00000557454 RIPOR2Q9Y4F9 1068 aa12.52□□□□□ -0.41
NEDD1-211ENST00000557454 CCL15-CCL14A0A0B4J2E2 113 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 UNCXA6NJT0 531 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 GNRH1P01148 92 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 MAGEA10P43363 369 aaPredicted RBP12.51□□□□□ -0.41
NEDD1-211ENST00000557454 IREB2P48200 963 aaKnown RBP12.51□□□□□ -0.41
NEDD1-211ENST00000557454 CACNB1Q02641 598 aaPredicted RBP12.51□□□□□ -0.41
NEDD1-211ENST00000557454 SF3B3Q15393 1217 aaKnown RBP12.51□□□□□ -0.41
NEDD1-211ENST00000557454 CCL15Q16663 113 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 DACT2Q5SW24 774 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 C7orf61Q8IZ16 206 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 RAET1EQ8TD07 263 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 FBXW7Q969H0 707 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 OPTNQ96CV9 577 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 RSPH6AQ9H0K4 717 aa12.51□□□□□ -0.41
NEDD1-211ENST00000557454 BIN2Q9UBW5 565 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms