RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PPIP5K2O43314 1243 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 GYG1P46976 350 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 KIAA2012Q0VF49 1180 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 C15orf52Q6ZUT6 534 aaKnown RBP15.82■□□□□ 0.12
SHMT2-227ENST00000557269 LPIN2Q92539 896 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 GCC1Q96CN9 775 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 GPR108Q9NPR9 543 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 TLR7Q9NYK1 1049 aaKnown RBP15.82■□□□□ 0.12
SHMT2-227ENST00000557269 MED23Q9ULK4 1368 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 ZNF609O15014 1411 aa15.82■□□□□ 0.12
SHMT2-227ENST00000557269 SBF1O95248 1867 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 SLC5A1P13866 664 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 LMNB1P20700 586 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 ERICH6BQ5W0A0 696 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 B4GALNT3Q6L9W6 998 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 LARGE2Q8N3Y3 721 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 FAM84BQ96KN1 310 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-227ENST00000557269 NEUROD6Q96NK8 337 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 EYA3Q99504 573 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 LRRCC1Q9C099 1032 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 ZC3H12CQ9C0D7 883 aaKnown RBP15.81■□□□□ 0.12
SHMT2-227ENST00000557269 CCDC8Q9H0W5 538 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-227ENST00000557269 AKAP2Q9Y2D5 859 aa15.81■□□□□ 0.12
SHMT2-227ENST00000557269 KDM2BQ8NHM5 1336 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 IFIT1P09914 478 aaKnown RBP15.8■□□□□ 0.12
SHMT2-227ENST00000557269 BCAMP50895 628 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 ANKRD45Q5TZF3 282 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 C9orf131Q5VYM1 1079 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 FBXO33Q7Z6M2 555 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 AACSQ86V21 672 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 C16orf71Q8IYS4 520 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-227ENST00000557269 XAGE2Q96GT9 111 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 DBNDD2Q9BQY9 259 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 DBNDD1Q9H9R9 158 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 KCNQ5Q9NR82 932 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 CCDC88AQ3V6T2 1871 aa15.8■□□□□ 0.12
SHMT2-227ENST00000557269 DCAF8L1A6NGE4 600 aa15.79■□□□□ 0.12
SHMT2-227ENST00000557269 YDJCA8MPS7 323 aa15.79■□□□□ 0.12
SHMT2-227ENST00000557269 CCDC136Q96JN2 1154 aa15.79■□□□□ 0.12
SHMT2-227ENST00000557269 VPS33BQ9H267 617 aa15.79■□□□□ 0.12
SHMT2-227ENST00000557269 PPP4R2Q9NY27 417 aa15.79■□□□□ 0.12
SHMT2-227ENST00000557269 RNF181Q9P0P0 153 aa15.79■□□□□ 0.12
SHMT2-227ENST00000557269 DBNLQ9UJU6 430 aaKnown RBP15.79■□□□□ 0.12
SHMT2-227ENST00000557269 UTRNP46939 3433 aa15.79■□□□□ 0.12
SHMT2-227ENST00000557269 ARAP2Q8WZ64 1704 aa15.78■□□□□ 0.12
SHMT2-227ENST00000557269 PHKA1P46020 1223 aa15.78■□□□□ 0.12
SHMT2-227ENST00000557269 CLASRPQ8N2M8 674 aaKnown RBP15.78■□□□□ 0.12
SHMT2-227ENST00000557269 OTUD7AQ8TE49 926 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-227ENST00000557269 ECE2O60344 883 aa15.77■□□□□ 0.12
SHMT2-227ENST00000557269 HIBADHP31937 336 aaKnown RBP15.77■□□□□ 0.12
SHMT2-227ENST00000557269 NUCB1Q02818 461 aa15.77■□□□□ 0.12
SHMT2-227ENST00000557269 CCDC102BQ68D86 513 aa15.77■□□□□ 0.12
SHMT2-227ENST00000557269 COA1Q9GZY4 146 aa15.77■□□□□ 0.12
SHMT2-227ENST00000557269 CD209Q9NNX6 404 aa15.77■□□□□ 0.12
SHMT2-227ENST00000557269 IQSEC3Q9UPP2 1182 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-227ENST00000557269 CAVIN4Q5BKX8 364 aa15.76■□□□□ 0.11
SHMT2-227ENST00000557269 ZNF804AQ7Z570 1209 aa15.76■□□□□ 0.11
SHMT2-227ENST00000557269 NIM1KQ8IY84 436 aa15.76■□□□□ 0.11
SHMT2-227ENST00000557269 TDRD7Q8NHU6 1098 aaKnown RBP15.76■□□□□ 0.11
SHMT2-227ENST00000557269 LNPKQ9C0E8 428 aa15.76■□□□□ 0.11
SHMT2-227ENST00000557269 ZNRF3Q9ULT6 936 aa15.76■□□□□ 0.11
SHMT2-227ENST00000557269 CHD4Q14839 1912 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 G3V3G9 751 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 FZD9O00144 591 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 IFIT2P09913 472 aaKnown RBP15.75■□□□□ 0.11
SHMT2-227ENST00000557269 IL1R1P14778 569 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 DCAF8Q5TAQ9 597 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 CHD1LQ86WJ1 897 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 JDP2Q8WYK2 163 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 JAG2Q9Y219 1238 aa15.75■□□□□ 0.11
SHMT2-227ENST00000557269 DICER1Q9UPY3 1922 aaKnown RBP15.74■□□□□ 0.11
SHMT2-227ENST00000557269 ZNF541Q9H0D2 1346 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 COL1A1P02452 1464 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-227ENST00000557269 RAD17O75943 681 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 SCARF1Q14162 830 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 GORABQ5T7V8 394 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 CENPQQ7L2Z9 268 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-227ENST00000557269 SKAP1Q86WV1 359 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 VPS37DQ86XT2 251 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 SCN9AQ15858 1988 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 TIAM2Q8IVF5 1701 aa15.74■□□□□ 0.11
SHMT2-227ENST00000557269 SALL3Q9BXA9 1300 aa15.73■□□□□ 0.11
SHMT2-227ENST00000557269 PDE4AP27815 886 aa15.73■□□□□ 0.11
SHMT2-227ENST00000557269 CXCL9Q07325 125 aa15.73■□□□□ 0.11
SHMT2-227ENST00000557269 TSHZ3Q63HK5 1081 aa15.73■□□□□ 0.11
SHMT2-227ENST00000557269 PI16Q6UXB8 463 aa15.73■□□□□ 0.11
SHMT2-227ENST00000557269 PODNQ7Z5L7 613 aa15.73■□□□□ 0.11
SHMT2-227ENST00000557269 MXD3Q9BW11 206 aa15.73■□□□□ 0.11
SHMT2-227ENST00000557269 ARID4AP29374 1257 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-227ENST00000557269 GTF2IP78347 998 aa15.72■□□□□ 0.11
SHMT2-227ENST00000557269 RASGRF1Q13972 1273 aa15.72■□□□□ 0.11
SHMT2-227ENST00000557269 ZNF646O15015 1829 aaPredicted RBP15.71■□□□□ 0.11
SHMT2-227ENST00000557269 PSMD14O00487 310 aa15.71■□□□□ 0.11
SHMT2-227ENST00000557269 MCAMP43121 646 aa15.71■□□□□ 0.11
SHMT2-227ENST00000557269 CCDC158Q5M9N0 1113 aa15.71■□□□□ 0.11
SHMT2-227ENST00000557269 TTC39AQ5SRH9 613 aa15.71■□□□□ 0.11
SHMT2-227ENST00000557269 SNRKQ9NRH2 765 aa15.71■□□□□ 0.11
SHMT2-227ENST00000557269 HMG20BQ9P0W2 317 aa15.71■□□□□ 0.11
SHMT2-227ENST00000557269 GTF3C3Q9Y5Q9 886 aa15.71■□□□□ 0.11
SHMT2-227ENST00000557269 NDUFB9Q9Y6M9 179 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 1114.8 ms