RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 RAD17O75943 681 aa21.69■■□□□ 1.06
SHMT2-225ENST00000556798 DPY19L2Q6NUT2 758 aa21.69■■□□□ 1.06
SHMT2-225ENST00000556798 RPAP2Q8IXW5 612 aaPredicted RBP21.69■■□□□ 1.06
SHMT2-225ENST00000556798 KCNQ5Q9NR82 932 aa21.69■■□□□ 1.06
SHMT2-225ENST00000556798 GJA3Q9Y6H8 435 aa21.69■■□□□ 1.06
SHMT2-225ENST00000556798 SURF6O75683 361 aaKnown RBP21.68■■□□□ 1.06
SHMT2-225ENST00000556798 IRX6P78412 446 aaPredicted RBP21.68■■□□□ 1.06
SHMT2-225ENST00000556798 CXCL9Q07325 125 aa21.68■■□□□ 1.06
SHMT2-225ENST00000556798 G3BP1Q13283 466 aaKnown RBP eCLIP21.68■■□□□ 1.065e-7■■■■□ 21.7
SHMT2-225ENST00000556798 PUM3Q15397 648 aaKnown RBP21.68■■□□□ 1.06
SHMT2-225ENST00000556798 GPBP1L1Q9HC44 474 aaPredicted RBP21.68■■□□□ 1.06
SHMT2-225ENST00000556798 CEP126Q9P2H0 1117 aa21.68■■□□□ 1.06
SHMT2-225ENST00000556798 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.68■■□□□ 1.06
SHMT2-225ENST00000556798 KDM2BQ8NHM5 1336 aa21.68■■□□□ 1.06
SHMT2-225ENST00000556798 SCN4AP35499 1836 aa21.68■■□□□ 1.06
SHMT2-225ENST00000556798 TFCP2Q12800 502 aa21.67■■□□□ 1.06
SHMT2-225ENST00000556798 OS9Q13438 667 aaPredicted RBP21.67■■□□□ 1.06
SHMT2-225ENST00000556798 C15orf52Q6ZUT6 534 aaKnown RBP21.67■■□□□ 1.06
SHMT2-225ENST00000556798 NMRK2Q9NPI5 230 aa21.67■■□□□ 1.06
SHMT2-225ENST00000556798 FGFR2P21802 821 aa21.66■■□□□ 1.06
SHMT2-225ENST00000556798 GYG1P46976 350 aa21.66■■□□□ 1.06
SHMT2-225ENST00000556798 CIAPIN1Q6FI81 312 aa21.66■■□□□ 1.06
SHMT2-225ENST00000556798 COA1Q9GZY4 146 aa21.66■■□□□ 1.06
SHMT2-225ENST00000556798 EXOC6BQ9Y2D4 811 aa21.66■■□□□ 1.06
SHMT2-225ENST00000556798 HMMRO75330 724 aa21.65■■□□□ 1.06
SHMT2-225ENST00000556798 SASH1O94885 1247 aa21.65■■□□□ 1.06
SHMT2-225ENST00000556798 ATP2B3Q16720 1220 aa21.65■■□□□ 1.06
SHMT2-225ENST00000556798 ZNF804AQ7Z570 1209 aa21.65■■□□□ 1.06
SHMT2-225ENST00000556798 GPC2Q8N158 579 aa21.65■■□□□ 1.06
SHMT2-225ENST00000556798 EXOC6Q8TAG9 804 aa21.65■■□□□ 1.06
SHMT2-225ENST00000556798 NOP58Q9Y2X3 529 aaKnown RBP21.65■■□□□ 1.06
SHMT2-225ENST00000556798 ZNF609O15014 1411 aa21.64■■□□□ 1.06
SHMT2-225ENST00000556798 PSMD14O00487 310 aa21.64■■□□□ 1.05
SHMT2-225ENST00000556798 SLC5A1P13866 664 aa21.64■■□□□ 1.05
SHMT2-225ENST00000556798 PODNQ7Z5L7 613 aa21.64■■□□□ 1.05
SHMT2-225ENST00000556798 LPIN2Q92539 896 aa21.64■■□□□ 1.05
SHMT2-225ENST00000556798 RRAGCQ9HB90 399 aa21.64■■□□□ 1.05
SHMT2-225ENST00000556798 CD209Q9NNX6 404 aa21.64■■□□□ 1.05
SHMT2-225ENST00000556798 PCDHB15Q9Y5E8 787 aa21.64■■□□□ 1.05
SHMT2-225ENST00000556798 IFIT1P09914 478 aaKnown RBP21.63■■□□□ 1.05
SHMT2-225ENST00000556798 FBXW7Q969H0 707 aa21.63■■□□□ 1.05
SHMT2-225ENST00000556798 FAM84BQ96KN1 310 aaPredicted RBP21.63■■□□□ 1.05
SHMT2-225ENST00000556798 ADORA1P30542 326 aa21.62■■□□□ 1.05
SHMT2-225ENST00000556798 HIBADHP31937 336 aaKnown RBP21.62■■□□□ 1.05
SHMT2-225ENST00000556798 TNIP1Q15025 636 aa21.62■■□□□ 1.05
SHMT2-225ENST00000556798 ZBTB12Q9Y330 459 aaPredicted RBP21.62■■□□□ 1.05
SHMT2-225ENST00000556798 A0A1B0GUL7 405 aa21.61■■□□□ 1.05
SHMT2-225ENST00000556798 POTECB2RU33 542 aa21.61■■□□□ 1.05
SHMT2-225ENST00000556798 APBB1O00213 710 aa21.61■■□□□ 1.05
SHMT2-225ENST00000556798 GMPSP49915 693 aaPredicted RBP21.61■■□□□ 1.05
SHMT2-225ENST00000556798 TIMM10P62072 90 aa21.61■■□□□ 1.05
SHMT2-225ENST00000556798 VPS37DQ86XT2 251 aa21.61■■□□□ 1.05
SHMT2-225ENST00000556798 L3MBTL3Q96JM7 780 aaPredicted RBP21.61■■□□□ 1.05
SHMT2-225ENST00000556798 JAG2Q9Y219 1238 aa21.61■■□□□ 1.05
SHMT2-225ENST00000556798 IL1R1P14778 569 aa21.6■■□□□ 1.05
SHMT2-225ENST00000556798 BCAMP50895 628 aa21.6■■□□□ 1.05
SHMT2-225ENST00000556798 SCNN1DP51172 638 aa21.6■■□□□ 1.05
SHMT2-225ENST00000556798 CAVIN4Q5BKX8 364 aa21.6■■□□□ 1.05
SHMT2-225ENST00000556798 FBXO33Q7Z6M2 555 aa21.6■■□□□ 1.05
SHMT2-225ENST00000556798 MXD3Q9BW11 206 aa21.6■■□□□ 1.05
SHMT2-225ENST00000556798 IQSEC3Q9UPP2 1182 aaPredicted RBP21.6■■□□□ 1.05
SHMT2-225ENST00000556798 AKAP2Q9Y2D5 859 aa21.6■■□□□ 1.05
SHMT2-225ENST00000556798 USP17L3A6NCW0 530 aa21.59■■□□□ 1.05
SHMT2-225ENST00000556798 USP17L4A6NCW7 530 aa21.59■■□□□ 1.05
SHMT2-225ENST00000556798 GTF2IP78347 998 aa21.59■■□□□ 1.05
SHMT2-225ENST00000556798 USP17L1Q7RTZ2 530 aa21.59■■□□□ 1.05
SHMT2-225ENST00000556798 NEUROD6Q96NK8 337 aa21.59■■□□□ 1.05
SHMT2-225ENST00000556798 VIL1P09327 827 aaKnown RBP21.58■■□□□ 1.05
SHMT2-225ENST00000556798 XAGE2Q96GT9 111 aa21.58■■□□□ 1.05
SHMT2-225ENST00000556798 SHTN1A0MZ66 631 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 KIF3CO14782 793 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 VEGFAP15692 232 aaPredicted RBP21.57■■□□□ 1.04
SHMT2-225ENST00000556798 HSP90AB4PQ58FF6 505 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 TNNI3KQ59H18 835 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 DACT2Q5SW24 774 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 TTLL5Q6EMB2 1281 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 RSBN1LQ6PCB5 846 aaPredicted RBP21.57■■□□□ 1.04
SHMT2-225ENST00000556798 ERC1Q8IUD2 1116 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 TDRD7Q8NHU6 1098 aaKnown RBP21.57■■□□□ 1.04
SHMT2-225ENST00000556798 FPGT-TNNI3KV9GXZ4 949 aa21.57■■□□□ 1.04
SHMT2-225ENST00000556798 COL1A1P02452 1464 aaPredicted RBP21.57■■□□□ 1.04
SHMT2-225ENST00000556798 IQCA1LA6NCM1 817 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 LMOD1P29536 600 aaPredicted RBP21.56■■□□□ 1.04
SHMT2-225ENST00000556798 EPS15P42566 896 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 PHKA1P46020 1223 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 STRIP1Q5VSL9 837 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 RHPN1Q8TCX5 695 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 BCL11AQ9H165 835 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 IL1RAPL2Q9NP60 686 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 GPRC5DQ9NZD1 345 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 HACL1Q9UJ83 578 aa21.56■■□□□ 1.04
SHMT2-225ENST00000556798 CHAF1AQ13111 956 aaPredicted RBP21.55■■□□□ 1.04
SHMT2-225ENST00000556798 GPR108Q9NPR9 543 aa21.55■■□□□ 1.04
SHMT2-225ENST00000556798 ADAMTSL1Q8N6G6 1762 aa21.54■■□□□ 1.04
SHMT2-225ENST00000556798 FRAT2O75474 233 aaPredicted RBP21.54■■□□□ 1.04
SHMT2-225ENST00000556798 EPHX2P34913 555 aa21.54■■□□□ 1.04
SHMT2-225ENST00000556798 AAMPQ13685 434 aa21.54■■□□□ 1.04
SHMT2-225ENST00000556798 CCDC102BQ68D86 513 aa21.54■■□□□ 1.04
SHMT2-225ENST00000556798 MICALL2Q8IY33 904 aa21.54■■□□□ 1.04
SHMT2-225ENST00000556798 TAF1DQ9H5J8 278 aaPredicted RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms