RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 STX8Q9UNK0 236 aa12.19□□□□□ -0.46
ACTN1-216ENST00000556083 RNF113AO15541 343 aaKnown RBP12.18□□□□□ -0.46
ACTN1-216ENST00000556083 SMARCA5O60264 1052 aaPredicted RBP12.18□□□□□ -0.46
ACTN1-216ENST00000556083 TRIM14Q14142 442 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 CAMK4Q16566 473 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 JDP2Q8WYK2 163 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 BICD1Q96G01 975 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 TMOD4Q9NZQ9 345 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 SLC4A4Q9Y6R1 1079 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 GPTP24298 496 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 NOP2P46087 812 aaKnown RBP12.18□□□□□ -0.46
ACTN1-216ENST00000556083 FAM193AP78312 1265 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 LRSAM1Q6UWE0 723 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 CCDC82Q8N4S0 544 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 TMEM87BQ96K49 555 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 UGGT2Q9NYU1 1516 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 MAGEB6P1A0A0J9YX57 407 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 SUPT20HQ8NEM7 779 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 LZTS2Q9BRK4 669 aa12.18□□□□□ -0.46
ACTN1-216ENST00000556083 DYNC1I1O14576 645 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 BRDTQ58F21 947 aaPredicted RBP12.17□□□□□ -0.46
ACTN1-216ENST00000556083 FBXO31Q5XUX0 539 aaPredicted RBP12.17□□□□□ -0.46
ACTN1-216ENST00000556083 XAGE3Q8WTP9 111 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 CSRNP2Q9H175 543 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 HSF2BPO75031 334 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 ATP2A2P16615 1042 aaKnown RBP12.17□□□□□ -0.46
ACTN1-216ENST00000556083 TMC6Q7Z403 805 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 LLPHQ9BRT6 129 aaKnown RBP12.17□□□□□ -0.46
ACTN1-216ENST00000556083 DCTPP1Q9H773 170 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 TRAPPC8Q9Y2L5 1435 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 PRAG1Q86YV5 1406 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 PARD3Q8TEW0 1356 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 PLCD1P51178 756 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 IQUBQ8NA54 791 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 ZNF622Q969S3 477 aaKnown RBP eCLIP12.17□□□□□ -0.461e-6■□□□□ 9.9
ACTN1-216ENST00000556083 NAP1L3Q99457 506 aaPredicted RBP12.17□□□□□ -0.46
ACTN1-216ENST00000556083 CCDC94Q9BW85 323 aaPredicted RBP12.17□□□□□ -0.46
ACTN1-216ENST00000556083 TSGA10Q9BZW7 698 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 ASXL2Q76L83 1435 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 BRF1Q92994 677 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 PAG1Q9NWQ8 432 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 PARP3Q9Y6F1 533 aa12.17□□□□□ -0.46
ACTN1-216ENST00000556083 CTAGE15A4D2H0 777 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 CTAGE8P0CG41 777 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 ATP6V1AP38606 617 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 COPS6Q7L5N1 327 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 CTAGE6Q86UF2 777 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 CTAGE4Q8IX94 777 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 SPINK5Q9NQ38 1064 aaPredicted RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 DDX21Q9NR30 783 aaKnown RBP eCLIP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 RBM8AQ9Y5S9 174 aaKnown RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 COMMD10Q9Y6G5 202 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 TCOF1Q13428 1488 aaKnown RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 PHACTR2O75167 634 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 NAPAP54920 295 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 UBASH3AP57075 661 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 CCT2P78371 535 aaKnown RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 CTR9Q6PD62 1173 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 MRPL50Q8N5N7 158 aaKnown RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 SIRT1Q96EB6 747 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 IQCGQ9H095 443 aaKnown RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 HAUS2Q9NVX0 235 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 DHX32Q7L7V1 743 aaKnown RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 USHBP1Q8N6Y0 703 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 TMX3Q96JJ7 454 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 KIF24Q5T7B8 1368 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 IVLP07476 585 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 RILPL1Q5EBL4 403 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 RRAGBQ5VZM2 374 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 IP6K1Q92551 441 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 RBM17Q96I25 401 aaKnown RBP12.16□□□□□ -0.46
ACTN1-216ENST00000556083 CCDC113Q9H0I3 377 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 SYNCQ9H7C4 482 aa12.16□□□□□ -0.46
ACTN1-216ENST00000556083 KRT2P35908 639 aa12.15□□□□□ -0.46
ACTN1-216ENST00000556083 LMBR1LQ6UX01 489 aa12.15□□□□□ -0.46
ACTN1-216ENST00000556083 ALDH3A1P30838 453 aa12.15□□□□□ -0.46
ACTN1-216ENST00000556083 KIF5AQ12840 1032 aa12.15□□□□□ -0.46
ACTN1-216ENST00000556083 SLC9C2Q5TAH2 1124 aa12.15□□□□□ -0.46
ACTN1-216ENST00000556083 GIMAP7Q8NHV1 300 aa12.15□□□□□ -0.46
ACTN1-216ENST00000556083 GOPCQ9HD26 462 aa12.15□□□□□ -0.46
ACTN1-216ENST00000556083 NIP7Q9Y221 180 aaKnown RBP eCLIP12.15□□□□□ -0.46
ACTN1-216ENST00000556083 ARHGEF10O15013 1369 aa12.15□□□□□ -0.47
ACTN1-216ENST00000556083 SPTLC2O15270 562 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 DZIP3Q86Y13 1208 aaKnown RBP12.14□□□□□ -0.47
ACTN1-216ENST00000556083 RTL1A6NKG5 1358 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 SDSP20132 328 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 NT5C2P49902 561 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 CNGA4Q8IV77 575 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 CCDC117Q8IWD4 279 aaPredicted RBP12.14□□□□□ -0.47
ACTN1-216ENST00000556083 CKAP2LQ8IYA6 745 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 ATP10BO94823 1461 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 ADCY5O95622 1261 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 LDHBP07195 334 aaKnown RBP12.14□□□□□ -0.47
ACTN1-216ENST00000556083 HAUS3Q68CZ6 603 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 CCDC65Q8IXS2 484 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 MTUS1Q9ULD2 1270 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 SSFA2P28290 1259 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 LMAN1P49257 510 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 JADE2Q9NQC1 790 aa12.14□□□□□ -0.47
ACTN1-216ENST00000556083 CHPF2Q9P2E5 772 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms