RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TRIM28Q13263 835 aaKnown RBP15.86■□□□□ 0.13
SHMT2-222ENST00000555774 TOM1L2Q6ZVM7 507 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 KIAA1524Q8TCG1 905 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 DDX11Q96FC9 970 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 CEP126Q9P2H0 1117 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 NR1I2O75469 434 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 A1BGP04217 495 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 EVCP57679 992 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 LRRC24Q50LG9 513 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 CKAP2LQ8IYA6 745 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 PRDM11Q9NQV5 511 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 LAMA4Q16363 1823 aa15.86■□□□□ 0.13
SHMT2-222ENST00000555774 CTDNEP1O95476 244 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 PRKCSHP14314 528 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-222ENST00000555774 IL2RBP14784 551 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 ADD1P35611 737 aaKnown RBP15.85■□□□□ 0.13
SHMT2-222ENST00000555774 APOBRQ0VD83 1088 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 CCDC158Q5M9N0 1113 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 CARD10Q9BWT7 1032 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 PLA2G12BQ9BX93 195 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 ZBTB3Q9H5J0 574 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 GTF2F1P35269 517 aaKnown RBP eCLIP15.85■□□□□ 0.13
SHMT2-222ENST00000555774 LRRC2Q9BYS8 371 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 KCNF1Q9H3M0 494 aa15.85■□□□□ 0.13
SHMT2-222ENST00000555774 TCIRG1Q13488 830 aa15.84■□□□□ 0.13
SHMT2-222ENST00000555774 CCDC57Q2TAC2 916 aa15.84■□□□□ 0.13
SHMT2-222ENST00000555774 LUZP1Q86V48 1076 aa15.84■□□□□ 0.13
SHMT2-222ENST00000555774 PDIA3P30101 505 aaKnown RBP15.84■□□□□ 0.13
SHMT2-222ENST00000555774 PLA2G4DQ86XP0 818 aa15.84■□□□□ 0.13
SHMT2-222ENST00000555774 RGS22Q8NE09 1264 aa15.84■□□□□ 0.13
SHMT2-222ENST00000555774 CCDC9Q9Y3X0 531 aaKnown RBP15.84■□□□□ 0.13
SHMT2-222ENST00000555774 MYH15Q9Y2K3 1946 aa15.83■□□□□ 0.13
SHMT2-222ENST00000555774 PCCAP05165 728 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-222ENST00000555774 CDC25BP30305 580 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 TTC39AQ5SRH9 613 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 MPNDQ8N594 471 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 ZNF594Q96JF6 807 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-222ENST00000555774 TEX13AQ9BXU3 409 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-222ENST00000555774 SHANK3Q9BYB0 1731 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 M0R2C6 588 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 ZNF165P49910 485 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 ZNF75DP51815 510 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 BRINP3Q76B58 766 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 WDR19Q8NEZ3 1342 aa15.83■□□□□ 0.12
SHMT2-222ENST00000555774 IMMTQ16891 758 aaKnown RBP15.82■□□□□ 0.12
SHMT2-222ENST00000555774 CCDC73Q6ZRK6 1079 aa15.82■□□□□ 0.12
SHMT2-222ENST00000555774 VSIG10Q8N0Z9 540 aa15.82■□□□□ 0.12
SHMT2-222ENST00000555774 FAM13BQ9NYF5 915 aa15.82■□□□□ 0.12
SHMT2-222ENST00000555774 STX1AQ16623 288 aa15.82■□□□□ 0.12
SHMT2-222ENST00000555774 SARM1Q6SZW1 724 aa15.82■□□□□ 0.12
SHMT2-222ENST00000555774 CCAR1Q8IX12 1150 aaKnown RBP15.82■□□□□ 0.12
SHMT2-222ENST00000555774 SPC24Q8NBT2 197 aa15.82■□□□□ 0.12
SHMT2-222ENST00000555774 OSBP2Q969R2 916 aa15.82■□□□□ 0.12
SHMT2-222ENST00000555774 PUS3Q9BZE2 481 aaKnown RBP15.82■□□□□ 0.12
SHMT2-222ENST00000555774 SOS2Q07890 1332 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-222ENST00000555774 CARMIL3Q8ND23 1372 aa15.81■□□□□ 0.12
SHMT2-222ENST00000555774 DHX16O60231 1041 aaKnown RBP15.81■□□□□ 0.12
SHMT2-222ENST00000555774 CSF1RP07333 972 aa15.81■□□□□ 0.12
SHMT2-222ENST00000555774 GORABQ5T7V8 394 aa15.81■□□□□ 0.12
SHMT2-222ENST00000555774 KIF6Q6ZMV9 814 aa15.81■□□□□ 0.12
SHMT2-222ENST00000555774 XAGE2Q96GT9 111 aa15.81■□□□□ 0.12
SHMT2-222ENST00000555774 PYCARDQ9ULZ3 195 aa15.81■□□□□ 0.12
SHMT2-222ENST00000555774 CCT2P78371 535 aaKnown RBP15.8■□□□□ 0.12
SHMT2-222ENST00000555774 RBM10P98175 930 aaKnown RBP15.8■□□□□ 0.12
SHMT2-222ENST00000555774 SLFNL1Q499Z3 407 aa15.8■□□□□ 0.12
SHMT2-222ENST00000555774 APPBP2Q92624 585 aa15.8■□□□□ 0.12
SHMT2-222ENST00000555774 DNAJC25Q9H1X3 360 aa15.8■□□□□ 0.12
SHMT2-222ENST00000555774 CDHR2Q9BYE9 1310 aa15.8■□□□□ 0.12
SHMT2-222ENST00000555774 FAM160A1Q05DH4 1040 aa15.8■□□□□ 0.12
SHMT2-222ENST00000555774 CHAF1AQ13111 956 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-222ENST00000555774 USP28Q96RU2 1077 aa15.8■□□□□ 0.12
SHMT2-222ENST00000555774 TRIM5Q9C035 493 aa15.8■□□□□ 0.12
SHMT2-222ENST00000555774 FKBP4Q02790 459 aaKnown RBP eCLIP15.79■□□□□ 0.12
SHMT2-222ENST00000555774 ZBTB38Q8NAP3 1195 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-222ENST00000555774 KINO60870 393 aaKnown RBP15.79■□□□□ 0.12
SHMT2-222ENST00000555774 PTGS1P23219 599 aa15.79■□□□□ 0.12
SHMT2-222ENST00000555774 C17orf53Q8N3J3 647 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-222ENST00000555774 ENGASEQ8NFI3 743 aa15.79■□□□□ 0.12
SHMT2-222ENST00000555774 ZNF512BQ96KM6 892 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-222ENST00000555774 TMOD3Q9NYL9 352 aa15.79■□□□□ 0.12
SHMT2-222ENST00000555774 RTEL1Q9NZ71 1219 aa15.79■□□□□ 0.12
SHMT2-222ENST00000555774 ABCA3Q99758 1704 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 A0A1W2PQ27 194 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 A0A1W2PQ64 194 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 A0A1W2PQD8 194 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 GOLGA6L19H0YKK7 550 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 IFIT5Q13325 482 aaKnown RBP15.78■□□□□ 0.12
SHMT2-222ENST00000555774 SNW1Q13573 536 aaKnown RBP15.78■□□□□ 0.12
SHMT2-222ENST00000555774 IQCB1Q15051 598 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 TAF7LQ5H9L4 462 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 ZSCAN25Q6NSZ9 544 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 MB21D2Q8IYB1 491 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-222ENST00000555774 NCOA5Q9HCD5 579 aaKnown RBP15.78■□□□□ 0.12
SHMT2-222ENST00000555774 ADORA1P30542 326 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 WASHC4Q2M389 1173 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 TTLL5Q6EMB2 1281 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 CCDC186Q7Z3E2 898 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 DRC7Q8IY82 874 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 NCOA7Q8NI08 942 aa15.78■□□□□ 0.12
SHMT2-222ENST00000555774 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.78■□□□□ 0.126e-7■■□□□ 14.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms