RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RFX5P48382 616 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-219ENST00000555563 PODNQ7Z5L7 613 aa17.19■□□□□ 0.34
SHMT2-219ENST00000555563 MICALL2Q8IY33 904 aa17.19■□□□□ 0.34
SHMT2-219ENST00000555563 COA1Q9GZY4 146 aa17.19■□□□□ 0.34
SHMT2-219ENST00000555563 ADARB2Q9NS39 739 aaKnown RBP17.19■□□□□ 0.34
SHMT2-219ENST00000555563 CLEC11AQ9Y240 323 aa17.19■□□□□ 0.34
SHMT2-219ENST00000555563 VIL1P09327 827 aaKnown RBP17.18■□□□□ 0.34
SHMT2-219ENST00000555563 RPS12P25398 132 aaKnown RBP17.18■□□□□ 0.34
SHMT2-219ENST00000555563 LRRC24Q50LG9 513 aa17.18■□□□□ 0.34
SHMT2-219ENST00000555563 USP50Q70EL3 339 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-219ENST00000555563 TMEM57Q8N5G2 664 aa17.18■□□□□ 0.34
SHMT2-219ENST00000555563 TRPM4Q8TD43 1214 aa17.18■□□□□ 0.34
SHMT2-219ENST00000555563 DPF2Q92785 391 aa17.18■□□□□ 0.34
SHMT2-219ENST00000555563 CNOT7Q9UIV1 285 aaKnown RBP17.18■□□□□ 0.34
SHMT2-219ENST00000555563 RIPOR2Q9Y4F9 1068 aa17.18■□□□□ 0.34
SHMT2-219ENST00000555563 MROH5Q6ZUA9 1318 aa17.18■□□□□ 0.34
SHMT2-219ENST00000555563 USP17L3A6NCW0 530 aa17.17■□□□□ 0.34
SHMT2-219ENST00000555563 USP17L4A6NCW7 530 aa17.17■□□□□ 0.34
SHMT2-219ENST00000555563 GNAI3P08754 354 aa17.17■□□□□ 0.34
SHMT2-219ENST00000555563 MAP1SQ66K74 1059 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-219ENST00000555563 C15orf52Q6ZUT6 534 aaKnown RBP17.17■□□□□ 0.34
SHMT2-219ENST00000555563 USP17L1Q7RTZ2 530 aa17.17■□□□□ 0.34
SHMT2-219ENST00000555563 HDAC5Q9UQL6 1122 aa17.17■□□□□ 0.34
SHMT2-219ENST00000555563 RSBN1LQ6PCB5 846 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-219ENST00000555563 FTSJ3Q8IY81 847 aaKnown RBP17.16■□□□□ 0.34
SHMT2-219ENST00000555563 H7C1D1 291 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 ITGBL1O95965 494 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-219ENST00000555563 RLBP1P12271 317 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 HIRAP54198 1017 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-219ENST00000555563 PTPN12Q05209 780 aaKnown RBP17.15■□□□□ 0.34
SHMT2-219ENST00000555563 METTL24Q5JXM2 366 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 DZIP1LQ8IYY4 767 aaKnown RBP17.15■□□□□ 0.34
SHMT2-219ENST00000555563 VGLL2Q8N8G2 317 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 AGBL3Q8NEM8 1001 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 FBXW7Q969H0 707 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 CD209Q9NNX6 404 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 PASKQ96RG2 1323 aa17.15■□□□□ 0.34
SHMT2-219ENST00000555563 PCNTO95613 3336 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 EYA2O00167 538 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 EGFRP00533 1210 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 UBE4AQ14139 1066 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 DACT2Q5SW24 774 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 SAMD7Q7Z3H4 446 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 ZNF804AQ7Z570 1209 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 CNTROBQ8N137 903 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 GMLQ99445 158 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 MXD3Q9BW11 206 aa17.14■□□□□ 0.33
SHMT2-219ENST00000555563 TBC1D10BQ4KMP7 808 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-219ENST00000555563 STRIP1Q5VSL9 837 aa17.13■□□□□ 0.33
SHMT2-219ENST00000555563 TNS4Q8IZW8 715 aa17.13■□□□□ 0.33
SHMT2-219ENST00000555563 PDE8BO95263 885 aa17.12■□□□□ 0.33
SHMT2-219ENST00000555563 MTX1Q13505 466 aa17.12■□□□□ 0.33
SHMT2-219ENST00000555563 KIF4BQ2VIQ3 1234 aa17.12■□□□□ 0.33
SHMT2-219ENST00000555563 ITPRIPQ8IWB1 547 aa17.12■□□□□ 0.33
SHMT2-219ENST00000555563 SIL1Q9H173 461 aa17.12■□□□□ 0.33
SHMT2-219ENST00000555563 RCAN3Q9UKA8 241 aa17.12■□□□□ 0.33
SHMT2-219ENST00000555563 ARAP2Q8WZ64 1704 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 GNAI2P04899 355 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 USP17L8P0C7I0 530 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 IL1R1P14778 569 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 GYG1P46976 350 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 ZNF280AP59817 542 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-219ENST00000555563 GTF2IP78347 998 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 TTLL5Q6EMB2 1281 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 ATG9AQ7Z3C6 839 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 PA2G4Q9UQ80 394 aaKnown RBP17.11■□□□□ 0.33
SHMT2-219ENST00000555563 MYO3BQ8WXR4 1341 aa17.11■□□□□ 0.33
SHMT2-219ENST00000555563 SRGAP3O43295 1099 aa17.1■□□□□ 0.33
SHMT2-219ENST00000555563 CAPN15O75808 1086 aa17.1■□□□□ 0.33
SHMT2-219ENST00000555563 CIAO1O76071 339 aa17.1■□□□□ 0.33
SHMT2-219ENST00000555563 PUM3Q15397 648 aaKnown RBP17.1■□□□□ 0.33
SHMT2-219ENST00000555563 RBM26Q5T8P6 1007 aaKnown RBP17.1■□□□□ 0.33
SHMT2-219ENST00000555563 PANK1Q8TE04 598 aa17.1■□□□□ 0.33
SHMT2-219ENST00000555563 ZC3H15Q8WU90 426 aaKnown RBP17.1■□□□□ 0.33
SHMT2-219ENST00000555563 COPRSQ9NQ92 184 aa17.1■□□□□ 0.33
SHMT2-219ENST00000555563 PGAP2Q9UHJ9 254 aa17.1■□□□□ 0.33
SHMT2-219ENST00000555563 FBXO3Q9UK99 471 aa17.1■□□□□ 0.33
SHMT2-219ENST00000555563 TRAF5O00463 557 aa17.09■□□□□ 0.33
SHMT2-219ENST00000555563 FMR1Q06787 632 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHMT2-219ENST00000555563 FAM84BQ96KN1 310 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-219ENST00000555563 CREBZFQ9NS37 354 aa17.09■□□□□ 0.33
SHMT2-219ENST00000555563 ASTN2O75129 1339 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-219ENST00000555563 PNMA6EA0A0J9YXQ4 647 aa17.08■□□□□ 0.32
SHMT2-219ENST00000555563 HSPA1AP0DMV8 641 aaKnown RBP17.08■□□□□ 0.32
SHMT2-219ENST00000555563 HSPA1BP0DMV9 641 aaKnown RBP17.08■□□□□ 0.32
SHMT2-219ENST00000555563 FGFR2P21802 821 aa17.08■□□□□ 0.32
SHMT2-219ENST00000555563 HIBADHP31937 336 aaKnown RBP17.08■□□□□ 0.32
SHMT2-219ENST00000555563 CERS5Q8N5B7 392 aa17.08■□□□□ 0.32
SHMT2-219ENST00000555563 GLIS2Q9BZE0 524 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-219ENST00000555563 C1orf115Q9H7X2 142 aa17.08■□□□□ 0.32
SHMT2-219ENST00000555563 MYOZ2Q9NPC6 264 aa17.08■□□□□ 0.32
SHMT2-219ENST00000555563 JAG2Q9Y219 1238 aa17.08■□□□□ 0.32
SHMT2-219ENST00000555563 TRPM7Q96QT4 1865 aa17.07■□□□□ 0.32
SHMT2-219ENST00000555563 IL15P40933 162 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-219ENST00000555563 FBXO33Q7Z6M2 555 aa17.07■□□□□ 0.32
SHMT2-219ENST00000555563 KIAA0825Q8IV33 1275 aa17.07■□□□□ 0.32
SHMT2-219ENST00000555563 TDRD7Q8NHU6 1098 aaKnown RBP17.07■□□□□ 0.32
SHMT2-219ENST00000555563 GGA3Q9NZ52 723 aa17.07■□□□□ 0.32
SHMT2-219ENST00000555563 FAM205AQ6ZU69 1335 aa17.06■□□□□ 0.32
SHMT2-219ENST00000555563 TMEM88BA6NKF7 163 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms