RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 PI16Q6UXB8 463 aa13.21□□□□□ -0.29
TDP1-211ENST00000555178 PIM2Q9P1W9 311 aa13.21□□□□□ -0.29
TDP1-211ENST00000555178 IQSEC3Q9UPP2 1182 aaPredicted RBP13.21□□□□□ -0.29
TDP1-211ENST00000555178 COL4A5P29400 1685 aa13.21□□□□□ -0.29
TDP1-211ENST00000555178 PHKA1P46020 1223 aa13.21□□□□□ -0.29
TDP1-211ENST00000555178 TBC1D16Q8TBP0 767 aa13.21□□□□□ -0.29
TDP1-211ENST00000555178 EDC3Q96F86 508 aaKnown RBP13.21□□□□□ -0.29
TDP1-211ENST00000555178 BCS1LQ9Y276 419 aa13.21□□□□□ -0.29
TDP1-211ENST00000555178 AK9Q5TCS8 1911 aa13.21□□□□□ -0.3
TDP1-211ENST00000555178 SCN9AQ15858 1988 aa13.21□□□□□ -0.3
TDP1-211ENST00000555178 ZNF804BA4D1E1 1349 aa13.21□□□□□ -0.3
TDP1-211ENST00000555178 UFL1O94874 794 aa13.2□□□□□ -0.3
TDP1-211ENST00000555178 IFIT2P09913 472 aaKnown RBP13.2□□□□□ -0.3
TDP1-211ENST00000555178 PUM3Q15397 648 aaKnown RBP13.2□□□□□ -0.3
TDP1-211ENST00000555178 PI4K2BQ8TCG2 481 aa13.2□□□□□ -0.3
TDP1-211ENST00000555178 GPR108Q9NPR9 543 aa13.2□□□□□ -0.3
TDP1-211ENST00000555178 XDHP47989 1333 aa13.2□□□□□ -0.3
TDP1-211ENST00000555178 RIMBP2O15034 1052 aa13.2□□□□□ -0.3
TDP1-211ENST00000555178 PRELPP51888 382 aa13.2□□□□□ -0.3
TDP1-211ENST00000555178 TTC22Q5TAA0 569 aa13.2□□□□□ -0.3
TDP1-211ENST00000555178 DALRD3Q5D0E6 543 aaKnown RBP13.19□□□□□ -0.3
TDP1-211ENST00000555178 MPNDQ8N594 471 aa13.19□□□□□ -0.3
TDP1-211ENST00000555178 LPIN2Q92539 896 aa13.19□□□□□ -0.3
TDP1-211ENST00000555178 FAM84BQ96KN1 310 aaPredicted RBP13.19□□□□□ -0.3
TDP1-211ENST00000555178 SNRKQ9NRH2 765 aa13.19□□□□□ -0.3
TDP1-211ENST00000555178 COL1A1P02452 1464 aaPredicted RBP13.19□□□□□ -0.3
TDP1-211ENST00000555178 ZNF646O15015 1829 aaPredicted RBP13.19□□□□□ -0.3
TDP1-211ENST00000555178 C6orf229H3BNL8 230 aa13.19□□□□□ -0.3
TDP1-211ENST00000555178 CHGBP05060 677 aa13.19□□□□□ -0.3
TDP1-211ENST00000555178 ANKRD2Q9GZV1 360 aa13.19□□□□□ -0.3
TDP1-211ENST00000555178 PODXL2Q9NZ53 605 aa13.19□□□□□ -0.3
TDP1-211ENST00000555178 YBX3P16989 372 aaKnown RBP eCLIP13.18□□□□□ -0.3
TDP1-211ENST00000555178 UBE4AQ14139 1066 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 C8orf34Q49A92 452 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 CCDC102BQ68D86 513 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 DPP8Q6V1X1 898 aaPredicted RBP13.18□□□□□ -0.3
TDP1-211ENST00000555178 BOLA2Q9H3K6 86 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 OSBPL3Q9H4L5 887 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 STAP2Q9UGK3 403 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 JAG2Q9Y219 1238 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 SBF1O95248 1867 aa13.18□□□□□ -0.3
TDP1-211ENST00000555178 KCNQ5Q9NR82 932 aa13.17□□□□□ -0.3
TDP1-211ENST00000555178 GGA1Q9UJY5 639 aa13.17□□□□□ -0.3
TDP1-211ENST00000555178 AKAP2Q9Y2D5 859 aa13.17□□□□□ -0.3
TDP1-211ENST00000555178 NFKBIEO00221 500 aa13.17□□□□□ -0.3
TDP1-211ENST00000555178 SLC5A1P13866 664 aa13.17□□□□□ -0.3
TDP1-211ENST00000555178 MCAMP43121 646 aa13.17□□□□□ -0.3
TDP1-211ENST00000555178 KCNJ4P48050 445 aa13.17□□□□□ -0.3
TDP1-211ENST00000555178 PELP1Q8IZL8 1130 aaKnown RBP13.17□□□□□ -0.3
TDP1-211ENST00000555178 RASSF7Q02833 373 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 DOK7Q18PE1 504 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 SLFNL1Q499Z3 407 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 BMP2KLQ5H9B9 411 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 FBXO33Q7Z6M2 555 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 ANTXR1Q9H6X2 564 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 ZNF277Q9NRM2 450 aaPredicted RBP13.16□□□□□ -0.3
TDP1-211ENST00000555178 ECHDC1Q9NTX5 307 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 LEMD3Q9Y2U8 911 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 SDSP20132 328 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 ATP2B4P23634 1241 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 AOC3Q16853 763 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 TMC4Q7Z404 712 aa13.16□□□□□ -0.3
TDP1-211ENST00000555178 IFIT1P09914 478 aaKnown RBP13.15□□□□□ -0.3
TDP1-211ENST00000555178 RASGRF1Q13972 1273 aa13.15□□□□□ -0.3
TDP1-211ENST00000555178 TTC41PQ6P2S7 1318 aa13.15□□□□□ -0.31
TDP1-211ENST00000555178 CCDC93Q567U6 631 aa13.15□□□□□ -0.31
TDP1-211ENST00000555178 GORABQ5T7V8 394 aa13.15□□□□□ -0.31
TDP1-211ENST00000555178 TBC1D9Q6ZT07 1266 aa13.15□□□□□ -0.31
TDP1-211ENST00000555178 HMG20BQ9P0W2 317 aa13.15□□□□□ -0.31
TDP1-211ENST00000555178 MYH7P12883 1935 aa13.14□□□□□ -0.31
TDP1-211ENST00000555178 AOX1Q06278 1338 aa13.14□□□□□ -0.31
TDP1-211ENST00000555178 ATP5JP18859 108 aa13.14□□□□□ -0.31
TDP1-211ENST00000555178 ZAP70P43403 619 aa13.14□□□□□ -0.31
TDP1-211ENST00000555178 TTC39AQ5SRH9 613 aa13.14□□□□□ -0.31
TDP1-211ENST00000555178 RTFDC1Q9BY42 306 aaPredicted RBP13.14□□□□□ -0.31
TDP1-211ENST00000555178 DBNDD1Q9H9R9 158 aa13.14□□□□□ -0.31
TDP1-211ENST00000555178 DOCK2Q92608 1830 aa13.14□□□□□ -0.31
TDP1-211ENST00000555178 TRIM6-TRIM34B2RNG4 842 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 GRIK5Q16478 980 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 WASHC4Q2M389 1173 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 RILPL2Q969X0 211 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 GPATCH3Q96I76 525 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 DNAJC2Q99543 621 aaKnown RBP13.13□□□□□ -0.31
TDP1-211ENST00000555178 MXD3Q9BW11 206 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 MED23Q9ULK4 1368 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 GLRX3O76003 335 aaKnown RBP13.13□□□□□ -0.31
TDP1-211ENST00000555178 SEC24BO95487 1268 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 ARID4AP29374 1257 aaPredicted RBP13.13□□□□□ -0.31
TDP1-211ENST00000555178 HIBADHP31937 336 aaKnown RBP13.13□□□□□ -0.31
TDP1-211ENST00000555178 BACH2Q9BYV9 841 aa13.13□□□□□ -0.31
TDP1-211ENST00000555178 CYP2E1P05181 493 aaPredicted RBP13.12□□□□□ -0.31
TDP1-211ENST00000555178 CD209Q9NNX6 404 aa13.12□□□□□ -0.31
TDP1-211ENST00000555178 ADAMTSL1Q8N6G6 1762 aa13.12□□□□□ -0.31
TDP1-211ENST00000555178 YDJCA8MPS7 323 aa13.12□□□□□ -0.31
TDP1-211ENST00000555178 GOLIM4O00461 696 aa13.12□□□□□ -0.31
TDP1-211ENST00000555178 FKBP4Q02790 459 aaKnown RBP eCLIP13.12□□□□□ -0.31
TDP1-211ENST00000555178 CCDC158Q5M9N0 1113 aa13.12□□□□□ -0.31
TDP1-211ENST00000555178 C15orf52Q6ZUT6 534 aaKnown RBP13.12□□□□□ -0.31
TDP1-211ENST00000555178 HAUS7Q99871 368 aa13.12□□□□□ -0.31
TDP1-211ENST00000555178 PIH1D3Q9NQM4 214 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms