RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MED23Q9ULK4 1368 aa14.55□□□□□ -0.08
CCDC88C-208ENST00000554165 ADAMTSL1Q8N6G6 1762 aa14.55□□□□□ -0.08
CCDC88C-208ENST00000554165 ITGBL1O95965 494 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 RLBP1P12271 317 aa14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 RFX5P48382 616 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 APLP1P51693 650 aa14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 SAMD7Q7Z3H4 446 aa14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 PNMA8AQ86V59 439 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 TMEM57Q8N5G2 664 aa14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 ADARB2Q9NS39 739 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-208ENST00000554165 A0A1B0GUL6 1792 aa14.53□□□□□ -0.08
CCDC88C-208ENST00000554165 TBC1D10BQ4KMP7 808 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-208ENST00000554165 RBM26Q5T8P6 1007 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-208ENST00000554165 ZKSCAN2Q63HK3 967 aa14.53□□□□□ -0.08
CCDC88C-208ENST00000554165 CNTROBQ8N137 903 aa14.53□□□□□ -0.08
CCDC88C-208ENST00000554165 USP17L3A6NCW0 530 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 USP17L4A6NCW7 530 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 TRAF5O00463 557 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 DLK2Q6UY11 383 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 USP50Q70EL3 339 aaPredicted RBP14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 USP17L1Q7RTZ2 530 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 PODNQ7Z5L7 613 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 DNAJC5GQ8N7S2 189 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 DPF2Q92785 391 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 FBXW7Q969H0 707 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 GMLQ99445 158 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 COA1Q9GZY4 146 aa14.52□□□□□ -0.09
CCDC88C-208ENST00000554165 ASTN2O75129 1339 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 PASKQ96RG2 1323 aa14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 H7C1D1 291 aa14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 PTPN12Q05209 780 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 DACT2Q5SW24 774 aa14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 RSBN1LQ6PCB5 846 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 SIL1Q9H173 461 aa14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 CD209Q9NNX6 404 aa14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 PA2G4Q9UQ80 394 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 JAG2Q9Y219 1238 aa14.51□□□□□ -0.09
CCDC88C-208ENST00000554165 RPS12P25398 132 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-208ENST00000554165 GYG1P46976 350 aa14.5□□□□□ -0.09
CCDC88C-208ENST00000554165 GTF2IP78347 998 aa14.5□□□□□ -0.09
CCDC88C-208ENST00000554165 METTL24Q5JXM2 366 aa14.5□□□□□ -0.09
CCDC88C-208ENST00000554165 C15orf52Q6ZUT6 534 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-208ENST00000554165 ATG9AQ7Z3C6 839 aa14.5□□□□□ -0.09
CCDC88C-208ENST00000554165 VGLL2Q8N8G2 317 aa14.5□□□□□ -0.09
CCDC88C-208ENST00000554165 TTLL5Q6EMB2 1281 aa14.49□□□□□ -0.09
CCDC88C-208ENST00000554165 PANK1Q8TE04 598 aa14.49□□□□□ -0.09
CCDC88C-208ENST00000554165 GLIS2Q9BZE0 524 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-208ENST00000554165 ZNF646O15015 1829 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 PSME4Q14997 1843 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 MROH5Q6ZUA9 1318 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 EYA2O00167 538 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 GNAI3P08754 354 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 ZNF280AP59817 542 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 UBE4AQ14139 1066 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 STRIP1Q5VSL9 837 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 DZIP1LQ8IYY4 767 aaKnown RBP14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 CERS5Q8N5B7 392 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 AGBL3Q8NEM8 1001 aa14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 FAM84BQ96KN1 310 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-208ENST00000554165 PDE8BO95263 885 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 USP17L8P0C7I0 530 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 IL1R1P14778 569 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 KIF4BQ2VIQ3 1234 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 ZNF804AQ7Z570 1209 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 ITPRIPQ8IWB1 547 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 C1orf115Q9H7X2 142 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 PGAP2Q9UHJ9 254 aa14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 SCAF8Q9UPN6 1271 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 IQSEC3Q9UPP2 1182 aaPredicted RBP14.47□□□□□ -0.09
CCDC88C-208ENST00000554165 POLR2AP24928 1970 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 PNMA6EA0A0J9YXQ4 647 aa14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 SRGAP3O43295 1099 aa14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 USP48Q86UV5 1035 aa14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 KIAA0825Q8IV33 1275 aa14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 FTSJ3Q8IY81 847 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 YTHDC1Q96MU7 727 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 RCAN3Q9UKA8 241 aa14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-208ENST00000554165 GNAI2P04899 355 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 FGFR2P21802 821 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 HIBADHP31937 336 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 BCAMP50895 628 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 CST9Q5W186 159 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 FBXO33Q7Z6M2 555 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 MYOZ2Q9NPC6 264 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 CREBZFQ9NS37 354 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 MKRN1Q9UHC7 482 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 PCDHAC2Q9Y5I4 1007 aa14.45□□□□□ -0.1
CCDC88C-208ENST00000554165 ZNF609O15014 1411 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 TMEM88BA6NKF7 163 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 ADM5C9JUS6 153 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 F8W031 263 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 ZBTB7BO15156 539 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 MTX1Q13505 466 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 SCARF1Q14162 830 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 GRIK5Q16478 980 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 NBPF9Q3BBW0 867 aa14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 TDRD7Q8NHU6 1098 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 ZC3H15Q8WU90 426 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-208ENST00000554165 KLRG1Q96E93 195 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms