RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 GOLIM4O00461 696 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 STK3Q13188 491 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 MCMDC2Q4G0Z9 681 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 CDC37L1Q7L3B6 337 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 SPC24Q8NBT2 197 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 RGS22Q8NE09 1264 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 ISCA1Q9BUE6 129 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 HMG20BQ9P0W2 317 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 RFX7Q2KHR2 1363 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 EYA2O00167 538 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 AP5Z1O43299 807 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 EVA1CP58658 441 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 FAM173BQ6P4H8 233 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 STOX1Q6ZVD7 989 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 FBXO41Q8TF61 875 aa14.4□□□□□ -0.1
SHMT2-207ENST00000553837 IL15P40933 162 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-207ENST00000553837 IRX5P78411 483 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-207ENST00000553837 GIMAP6Q6P9H5 292 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 DNAJC10Q8IXB1 793 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 PIGBQ92521 554 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 ZNF330Q9Y3S2 320 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-207ENST00000553837 CCDC192P0DO97 292 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 LARP1BQ659C4 914 aaKnown RBP14.39□□□□□ -0.11
SHMT2-207ENST00000553837 FERMT3Q86UX7 667 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 TSPYL1Q9H0U9 437 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 GPR108Q9NPR9 543 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 PAG1Q9NWQ8 432 aa14.39□□□□□ -0.11
SHMT2-207ENST00000553837 A0A1B0GUL7 405 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 TCIRG1Q13488 830 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 SYNE4Q8N205 404 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 SECISBP2LQ93073 1101 aaKnown RBP14.38□□□□□ -0.11
SHMT2-207ENST00000553837 CCDC85AQ96PX6 553 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-207ENST00000553837 NEK1Q96PY6 1258 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 LRRC2Q9BYS8 371 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 TMOD3Q9NYL9 352 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 SH3TC1Q8TE82 1336 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 PALLDQ8WX93 1383 aa14.38□□□□□ -0.11
SHMT2-207ENST00000553837 ANKRD1Q15327 319 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 TERF2Q15554 542 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 CCDC112Q8NEF3 446 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 U3KPZ7 1027 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-207ENST00000553837 JAK2O60674 1132 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 PTGS1P23219 599 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 ADORA1P30542 326 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 FAM193AP78312 1265 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 Q6ZUG5 572 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 KIF18AQ8NI77 898 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 FAM89AQ96GI7 184 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 ATG3Q9NT62 314 aa14.37□□□□□ -0.11
SHMT2-207ENST00000553837 CIAO1O76071 339 aa14.36□□□□□ -0.11
SHMT2-207ENST00000553837 TNNT1P13805 278 aa14.36□□□□□ -0.11
SHMT2-207ENST00000553837 ZMYM1Q5SVZ6 1142 aa14.36□□□□□ -0.11
SHMT2-207ENST00000553837 KRT222Q8N1A0 295 aa14.36□□□□□ -0.11
SHMT2-207ENST00000553837 LAMA4Q16363 1823 aa14.36□□□□□ -0.11
SHMT2-207ENST00000553837 TTC6Q86TZ1 520 aa14.36□□□□□ -0.11
SHMT2-207ENST00000553837 SLC4A9Q96Q91 983 aa14.36□□□□□ -0.11
SHMT2-207ENST00000553837 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.35□□□□□ -0.11
SHMT2-207ENST00000553837 IFIT1P09914 478 aaKnown RBP14.35□□□□□ -0.11
SHMT2-207ENST00000553837 KRT32Q14532 448 aa14.35□□□□□ -0.11
SHMT2-207ENST00000553837 HLFQ16534 295 aa14.35□□□□□ -0.11
SHMT2-207ENST00000553837 NHSL1Q5SYE7 1610 aa14.35□□□□□ -0.11
SHMT2-207ENST00000553837 FAM200AQ8TCP9 573 aa14.35□□□□□ -0.11
SHMT2-207ENST00000553837 GTF3C6Q969F1 213 aa14.35□□□□□ -0.11
SHMT2-207ENST00000553837 TIGD1Q96MW7 591 aa14.35□□□□□ -0.11
SHMT2-207ENST00000553837 BTG4Q9NY30 223 aa14.35□□□□□ -0.11
SHMT2-207ENST00000553837 MAST3O60307 1309 aa14.34□□□□□ -0.11
SHMT2-207ENST00000553837 M0R2C6 588 aa14.34□□□□□ -0.11
SHMT2-207ENST00000553837 C16orf45Q96MC5 204 aaPredicted RBP14.34□□□□□ -0.11
SHMT2-207ENST00000553837 HELLSQ9NRZ9 838 aa14.34□□□□□ -0.11
SHMT2-207ENST00000553837 TRIM28Q13263 835 aaKnown RBP14.34□□□□□ -0.11
SHMT2-207ENST00000553837 SCARF1Q14162 830 aa14.34□□□□□ -0.11
SHMT2-207ENST00000553837 CCDC186Q7Z3E2 898 aa14.34□□□□□ -0.11
SHMT2-207ENST00000553837 ITGB4P16144 1822 aa14.34□□□□□ -0.11
SHMT2-207ENST00000553837 HSPD1P10809 573 aaKnown RBP14.33□□□□□ -0.11
SHMT2-207ENST00000553837 DRC7Q8IY82 874 aa14.33□□□□□ -0.11
SHMT2-207ENST00000553837 ZNF397Q8NF99 534 aaPredicted RBP14.33□□□□□ -0.11
SHMT2-207ENST00000553837 BRF1Q92994 677 aa14.33□□□□□ -0.11
SHMT2-207ENST00000553837 FOXP2O15409 715 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 RNF113AO15541 343 aaKnown RBP14.33□□□□□ -0.12
SHMT2-207ENST00000553837 PCCAP05165 728 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-207ENST00000553837 CSF1RP07333 972 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 SCRN1Q12765 414 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 CCDC57Q2TAC2 916 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 TTLL5Q6EMB2 1281 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.33□□□□□ -0.12
SHMT2-207ENST00000553837 CREBRFQ8IUR6 639 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 OSBP2Q969R2 916 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 XAGE2Q96GT9 111 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 YY1AP1Q9H869 796 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 CALCOCO1Q9P1Z2 691 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 CEP126Q9P2H0 1117 aa14.33□□□□□ -0.12
SHMT2-207ENST00000553837 GPTP24298 496 aa14.32□□□□□ -0.12
SHMT2-207ENST00000553837 MMP14P50281 582 aa14.32□□□□□ -0.12
SHMT2-207ENST00000553837 TPD52L1Q16890 204 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-207ENST00000553837 PI16Q6UXB8 463 aa14.32□□□□□ -0.12
SHMT2-207ENST00000553837 DSCC1Q9BVC3 393 aa14.32□□□□□ -0.12
SHMT2-207ENST00000553837 BCCIPQ9P287 314 aaKnown RBP eCLIP14.32□□□□□ -0.12
SHMT2-207ENST00000553837 TFIP11Q9UBB9 837 aaKnown RBP14.32□□□□□ -0.12
SHMT2-207ENST00000553837 EXOSC10Q01780 885 aaKnown RBP14.32□□□□□ -0.12
SHMT2-207ENST00000553837 FKBP4Q02790 459 aaKnown RBP eCLIP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms