RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 AATKQ6ZMQ8 1374 aa7.45□□□□□ -1.22
CHMP4A-210ENST00000552620 PIK3R4Q99570 1358 aa7.45□□□□□ -1.22
CHMP4A-210ENST00000552620 FAM135BQ49AJ0 1406 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 YEATS2Q9ULM3 1422 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 AGLP35573 1532 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 NRG2O14511 850 aaPredicted RBP7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 ADH1AP07327 375 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 ZNF853P0CG23 659 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 PRKAR2BP31323 418 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 ADD1P35611 737 aaKnown RBP7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 SMTNP53814 917 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 BMP2KLQ5H9B9 411 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 Q6ZNB5 142 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 CHD1LQ86WJ1 897 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 HSCBQ8IWL3 235 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 NBPF15Q8N660 670 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 PURBQ96QR8 312 aaKnown RBP7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 API5Q9BZZ5 524 aaKnown RBP7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 RAB6BQ9NRW1 208 aa7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 SCHIP1Q9P0W5 487 aaPredicted RBP7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 DNMT3AQ9Y6K1 912 aaPredicted RBP7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 EDC4Q6P2E9 1401 aaKnown RBP7.44□□□□□ -1.22
CHMP4A-210ENST00000552620 REREQ9P2R6 1566 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 PTMSP20962 102 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 MCM4P33991 863 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 IL13P35225 146 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 PSMA6P60900 246 aaKnown RBP7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 FOXK2Q01167 660 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 FOXC1Q12948 553 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 NAA30Q147X3 362 aaPredicted RBP7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 MTFR1Q15390 333 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 TLR1Q15399 786 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 DNAJC14Q6Y2X3 702 aaPredicted RBP7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 SLC9A9Q8IVB4 645 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 FAM43AQ8N2R8 423 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 STAG2Q8N3U4 1231 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 SNIP1Q8TAD8 396 aaKnown RBP7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 HELQQ8TDG4 1101 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 XAGE2Q96GT9 111 aa7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 SLKQ9H2G2 1235 aaPredicted RBP7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 CPSF1Q10570 1443 aaKnown RBP7.43□□□□□ -1.22
CHMP4A-210ENST00000552620 CNKSR1Q969H4 720 aa7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 ESYT1Q9BSJ8 1104 aa7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 BRPF3Q9ULD4 1205 aa7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 ISY1Q9ULR0 285 aaKnown RBP7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 KIF20BQ96Q89 1820 aa7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 MYO5BQ9ULV0 1848 aa7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 PTCH1Q13635 1447 aa7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 RIMS2Q9UQ26 1411 aa7.42□□□□□ -1.22
CHMP4A-210ENST00000552620 TTC24A2A3L6 582 aaPredicted RBP7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 CDK2AP1O14519 115 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 FAM13AO94988 1023 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 IL2RAP01589 272 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 MAPK1P28482 360 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 CLN3Q13286 438 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 C16orf46Q6P387 395 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 CAPN12Q6ZSI9 719 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 TRIM67Q6ZTA4 783 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 COG3Q96JB2 828 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 DCTN4Q9UJW0 460 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 ABCC4O15439 1325 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 A2ML1A8K2U0 1454 aa7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 CDK12Q9NYV4 1490 aaPredicted RBP7.41□□□□□ -1.22
CHMP4A-210ENST00000552620 A0A1W2PRU2 124 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 ZIC2O95409 532 aaPredicted RBP7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 PRR20EP86478 221 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 PRR20CP86479 221 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 PRR20DP86480 221 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 PRR20BP86481 221 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 PRR20AP86496 221 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 ANKRD45Q5TZF3 282 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 WAPLQ7Z5K2 1190 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 ZSCAN29Q8IWY8 852 aaPredicted RBP7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 CYP4X1Q8N118 509 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 PHACTR3Q96KR7 559 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 NLRP3Q96P20 1036 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 C2orf49Q9BVC5 232 aaPredicted RBP7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 LNPKQ9C0E8 428 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 MBIPQ9NS73 344 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 PKD2L1Q9P0L9 805 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 SPATA31D1Q6ZQQ2 1576 aa7.4□□□□□ -1.22
CHMP4A-210ENST00000552620 RBM47A0AV96 593 aaKnown RBP7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 FSD2A1L4K1 749 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 ANKRD33BA6NCL7 494 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 GOLGA6L3A6NEY3 463 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 GTF2E1P29083 439 aaPredicted RBP7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 DDIT3P35638 169 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 PTGIRP43119 386 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 WDR4P57081 412 aaKnown RBP7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 CBLBQ13191 982 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 MTMR3Q13615 1198 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 SKOR2Q2VWA4 1001 aaPredicted RBP7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 TWISTNBQ3B726 338 aaPredicted RBP7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 TBCELQ5QJ74 424 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 INTS3Q68E01 1043 aaKnown RBP7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 Q6ZVU0 165 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 NUDT16Q96DE0 195 aaKnown RBP7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 ITPKCQ96DU7 683 aa7.39□□□□□ -1.23
CHMP4A-210ENST00000552620 LRRC7Q96NW7 1537 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms