RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 SEC16BQ96JE7 1060 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 OSMRQ99650 979 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 MARK1Q9P0L2 795 aa9.28□□□□□ -0.92
LIMA1-210ENST00000552045 BNIP3LO60238 219 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 FBXO24O75426 580 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 ACPPP15309 386 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 PLAURQ03405 335 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 SPEM2Q0P670 501 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 CEP120Q8N960 986 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 ZFYVE1Q9HBF4 777 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 NDFIP2Q9NV92 336 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 HCN2Q9UL51 889 aa9.27□□□□□ -0.93
LIMA1-210ENST00000552045 SLC35F4A4IF30 521 aa9.26□□□□□ -0.93
LIMA1-210ENST00000552045 H7C1W4 665 aa9.26□□□□□ -0.93
LIMA1-210ENST00000552045 DZANK1Q9NVP4 752 aa9.26□□□□□ -0.93
LIMA1-210ENST00000552045 GRIA4P48058 902 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 PTSQ03393 145 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 MAP3K11Q16584 847 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 DBN1Q16643 649 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 TPTE2Q6XPS3 522 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 DHX32Q7L7V1 743 aaKnown RBP9.25□□□□□ -0.93
LIMA1-210ENST00000552045 ZNF296Q8WUU4 475 aaPredicted RBP9.25□□□□□ -0.93
LIMA1-210ENST00000552045 BHMTQ93088 406 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 EAF1Q96JC9 268 aaPredicted RBP9.25□□□□□ -0.93
LIMA1-210ENST00000552045 RHOVQ96L33 236 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 TRIM47Q96LD4 638 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 SLC30A3Q99726 388 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 PIF1Q9H611 641 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 ZSWIM4Q9H7M6 989 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 KCNQ5Q9NR82 932 aa9.25□□□□□ -0.93
LIMA1-210ENST00000552045 GMPR2Q9P2T1 348 aaKnown RBP9.25□□□□□ -0.93
LIMA1-210ENST00000552045 TRPA1O75762 1119 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 ITPKAP23677 461 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 LIG3P49916 1009 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 FBXL19Q6PCT2 694 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 TRIM22Q8IYM9 498 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 PHC3Q8NDX5 983 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 NT5C1AQ9BXI3 368 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 CEP44Q9C0F1 390 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 OSBPL2Q9H1P3 480 aa9.24□□□□□ -0.93
LIMA1-210ENST00000552045 TMA7Q9Y2S6 64 aaKnown RBP9.24□□□□□ -0.93
LIMA1-210ENST00000552045 TLDC2A0PJX2 215 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 SOBPA7XYQ1 873 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 SSBP05455 408 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIMA1-210ENST00000552045 CELA3AP09093 270 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 CD33P20138 364 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 NASPP49321 788 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-210ENST00000552045 NRLP54845 237 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 SPRED3Q2MJR0 410 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 RAB44Q7Z6P3 723 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-210ENST00000552045 ABHD17AQ96GS6 310 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 NSUN5Q96P11 429 aaKnown RBP9.23□□□□□ -0.93
LIMA1-210ENST00000552045 BHLHE41Q9C0J9 482 aaPredicted RBP9.23□□□□□ -0.93
LIMA1-210ENST00000552045 TLR6Q9Y2C9 796 aa9.23□□□□□ -0.93
LIMA1-210ENST00000552045 NFKBIEO00221 500 aa9.22□□□□□ -0.93
LIMA1-210ENST00000552045 GARTP22102 1010 aa9.22□□□□□ -0.93
LIMA1-210ENST00000552045 CKAP2LQ8IYA6 745 aa9.22□□□□□ -0.93
LIMA1-210ENST00000552045 TMEM102Q8N9M5 508 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-210ENST00000552045 NXPE3Q969Y0 559 aa9.22□□□□□ -0.93
LIMA1-210ENST00000552045 SPACA7Q96KW9 195 aa9.22□□□□□ -0.93
LIMA1-210ENST00000552045 EFR3BQ9Y2G0 817 aa9.22□□□□□ -0.93
LIMA1-210ENST00000552045 SUPT16HQ9Y5B9 1047 aaKnown RBP9.22□□□□□ -0.93
LIMA1-210ENST00000552045 A0A096LPE4 126 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 A0A1W2PPZ6 126 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 METTL12A8MUP2 240 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 ENC1O14682 589 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 GREM1O60565 184 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 PF4P02776 101 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 FAM160A1Q05DH4 1040 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 NECAB3Q96P71 396 aaPredicted RBP9.21□□□□□ -0.94
LIMA1-210ENST00000552045 HHIPQ96QV1 700 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 GINM1Q9NU53 330 aa9.21□□□□□ -0.94
LIMA1-210ENST00000552045 ATXN7L1Q9ULK2 861 aaPredicted RBP9.21□□□□□ -0.94
LIMA1-210ENST00000552045 SOX9P48436 509 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 LMNB2Q03252 620 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 NFX1Q12986 1120 aaKnown RBP9.2□□□□□ -0.94
LIMA1-210ENST00000552045 CAMK2GQ13555 558 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-210ENST00000552045 COL9A2Q14055 689 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-210ENST00000552045 RPS26P11Q5JNZ5 115 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-210ENST00000552045 FAM182BQ5T319 152 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 NBPF6Q5VWK0 638 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 CCDC155Q8N6L0 562 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 GMCL1Q96IK5 515 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 NBPF4Q96M43 638 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 ZNF408Q9H9D4 720 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 SEC31BQ9NQW1 1179 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 STRIP2Q9ULQ0 834 aa9.2□□□□□ -0.94
LIMA1-210ENST00000552045 LOC102724428A0A0B4J2F2 783 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 PDE2AO00408 941 aaPredicted RBP9.19□□□□□ -0.94
LIMA1-210ENST00000552045 SIK1P57059 783 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 GPLD1P80108 840 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 NEUROD1Q13562 356 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 TTBK2Q6IQ55 1244 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 AGMOQ6ZNB7 445 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 TRPM4Q8TD43 1214 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 ZNF576Q9H609 170 aa9.19□□□□□ -0.94
LIMA1-210ENST00000552045 ZBTB42B2RXF5 422 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 C11orf95C9JLR9 678 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-210ENST00000552045 SNRPBP14678 240 aaKnown RBP9.18□□□□□ -0.94
LIMA1-210ENST00000552045 BMS1Q14692 1282 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms