RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 PDILTQ8N807 584 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 UTP14AQ9BVJ6 771 aaKnown RBP10□□□□□ -0.81
CLIP1-218ENST00000545889 RNF41Q9H4P4 317 aaPredicted RBP10□□□□□ -0.81
CLIP1-218ENST00000545889 ABCC4O15439 1325 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 USP32Q8NFA0 1604 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 RAB11FIP3O75154 756 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 ZNF594Q96JF6 807 aaPredicted RBP10□□□□□ -0.81
CLIP1-218ENST00000545889 OTUD7AQ8TE49 926 aaPredicted RBP10□□□□□ -0.81
CLIP1-218ENST00000545889 CPDO75976 1380 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 HEG1Q9ULI3 1381 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 COL3A1P02461 1466 aaPredicted RBP10□□□□□ -0.81
CLIP1-218ENST00000545889 CCDC196A0A1B0GTZ2 297 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 EIF6P56537 245 aaKnown RBP10□□□□□ -0.81
CLIP1-218ENST00000545889 WASF1Q92558 559 aa10□□□□□ -0.81
CLIP1-218ENST00000545889 CCDC97Q96F63 343 aaPredicted RBP10□□□□□ -0.81
CLIP1-218ENST00000545889 NEURL1BA8MQ27 555 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 GLRX3O76003 335 aaKnown RBP9.99□□□□□ -0.81
CLIP1-218ENST00000545889 BEND3Q5T5X7 828 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 IQSEC3Q9UPP2 1182 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-218ENST00000545889 SPATA31A6Q5VVP1 1343 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 MCM2P49736 904 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 GSTO1P78417 241 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 NUCB1Q02818 461 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 CAVIN1Q6NZI2 390 aaKnown RBP9.99□□□□□ -0.81
CLIP1-218ENST00000545889 TSPY2A6NKD2 308 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 VPS72Q15906 364 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 UTP14CQ5TAP6 766 aaKnown RBP9.99□□□□□ -0.81
CLIP1-218ENST00000545889 CCDC82Q8N4S0 544 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 TBC1D2Q9BYX2 928 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 DCTPP1Q9H773 170 aa9.99□□□□□ -0.81
CLIP1-218ENST00000545889 B4DLN1 442 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 MRPL12P52815 198 aaKnown RBP9.98□□□□□ -0.81
CLIP1-218ENST00000545889 C8orf34Q49A92 452 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 FAM196AQ6ZSG2 479 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 ZNF592Q92610 1267 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 MEGF6O75095 1541 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 CHD2O14647 1828 aaKnown RBP9.98□□□□□ -0.81
CLIP1-218ENST00000545889 LIG1P18858 919 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 PDE4BQ07343 736 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 DPY19L2Q6NUT2 758 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 STX8Q9UNK0 236 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 XRN1Q8IZH2 1706 aaKnown RBP9.98□□□□□ -0.81
CLIP1-218ENST00000545889 PALLDQ8WX93 1383 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 RIMBP2O15034 1052 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 TNNI2P48788 182 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 TCIRG1Q13488 830 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 ZGPATQ8N5A5 531 aaKnown RBP9.98□□□□□ -0.81
CLIP1-218ENST00000545889 CNBD1Q8NA66 436 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 VAT1LQ9HCJ6 419 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 BCS1LQ9Y276 419 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 ADGRB2O60241 1585 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 SPATA31A5Q5VU36 1347 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 SPATA31A7Q8IWB4 1347 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 ME1P48163 572 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 HMGN5P82970 282 aaKnown RBP9.98□□□□□ -0.81
CLIP1-218ENST00000545889 PLS1Q14651 629 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 CCDC191Q8NCU4 936 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 SAMM50Q9Y512 469 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 KNDC1Q76NI1 1749 aa9.98□□□□□ -0.81
CLIP1-218ENST00000545889 PPP1R12BO60237 982 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-218ENST00000545889 MSL1Q68DK7 614 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 SMC5Q8IY18 1101 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 CCDC39Q9UFE4 941 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 NALCNQ8IZF0 1738 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 SH3TC1Q8TE82 1336 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 SLC4A8Q2Y0W8 1093 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 ZNF804AQ7Z570 1209 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 LARGE2Q8N3Y3 721 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 RAB34Q9BZG1 259 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 TRAF1Q13077 416 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 GPATCH11Q8N954 259 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 TMEM51Q9NW97 253 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 ZNHIT6Q9NWK9 470 aaKnown RBP9.97□□□□□ -0.81
CLIP1-218ENST00000545889 FMN2Q9NZ56 1722 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 H0YIN7 160 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 EAPPQ56P03 285 aaPredicted RBP9.97□□□□□ -0.81
CLIP1-218ENST00000545889 USPL1Q5W0Q7 1092 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 TIGD1Q96MW7 591 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 CRNKL1Q9BZJ0 848 aaKnown RBP9.97□□□□□ -0.81
CLIP1-218ENST00000545889 ECHDC1Q9NTX5 307 aa9.97□□□□□ -0.81
CLIP1-218ENST00000545889 CCDC181Q5TID7 509 aa9.96□□□□□ -0.81
CLIP1-218ENST00000545889 CKAP2LQ8IYA6 745 aa9.96□□□□□ -0.81
CLIP1-218ENST00000545889 JAKMIP1Q96N16 626 aaKnown RBP9.96□□□□□ -0.81
CLIP1-218ENST00000545889 SEPT11Q9NVA2 429 aaKnown RBP9.96□□□□□ -0.81
CLIP1-218ENST00000545889 RFX1P22670 979 aa9.96□□□□□ -0.81
CLIP1-218ENST00000545889 TFCP2Q12800 502 aa9.96□□□□□ -0.81
CLIP1-218ENST00000545889 PICALMQ13492 652 aa9.96□□□□□ -0.81
CLIP1-218ENST00000545889 DHX8Q14562 1220 aaKnown RBP9.96□□□□□ -0.81
CLIP1-218ENST00000545889 TTF1Q15361 905 aaPredicted RBP9.96□□□□□ -0.81
CLIP1-218ENST00000545889 TTLL5Q6EMB2 1281 aa9.96□□□□□ -0.81
CLIP1-218ENST00000545889 LUC7LQ9NQ29 371 aaKnown RBP9.96□□□□□ -0.81
CLIP1-218ENST00000545889 ZNF213O14771 459 aa9.96□□□□□ -0.82
CLIP1-218ENST00000545889 FIBPO43427 364 aa9.96□□□□□ -0.82
CLIP1-218ENST00000545889 POTEJP0CG39 1038 aa9.96□□□□□ -0.82
CLIP1-218ENST00000545889 PDE1AP54750 535 aa9.96□□□□□ -0.82
CLIP1-218ENST00000545889 TIMM10P62072 90 aa9.96□□□□□ -0.82
CLIP1-218ENST00000545889 SRP68Q9UHB9 627 aaKnown RBP9.96□□□□□ -0.82
CLIP1-218ENST00000545889 NCAPD2Q15021 1401 aa9.96□□□□□ -0.82
CLIP1-218ENST00000545889 NBPF26B4DH59 902 aa9.95□□□□□ -0.82
CLIP1-218ENST00000545889 GOLIM4O00461 696 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms