RNA–Protein interactions for RNA: ENST00000544093.5

CHFR-222, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 942 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-222	ENST00000544093	ZNF594	Q96JF6	807 aa	Predicted RBP	29.2	■■■□□ 2.26
CHFR-222	ENST00000544093	STRIP1	Q5VSL9	837 aa		29.19	■■■□□ 2.26
CHFR-222	ENST00000544093	ANKRD44	Q8N8A2	993 aa		29.19	■■■□□ 2.26
CHFR-222	ENST00000544093	JMY	Q8N9B5	988 aa		29.19	■■■□□ 2.26
CHFR-222	ENST00000544093	TRPM4	Q8TD43	1214 aa		29.19	■■■□□ 2.26
CHFR-222	ENST00000544093	TRPM7	Q96QT4	1865 aa		29.19	■■■□□ 2.26
CHFR-222	ENST00000544093	TAF5L	O75529	589 aa		29.18	■■■□□ 2.26
CHFR-222	ENST00000544093	MMP14	P50281	582 aa		29.18	■■■□□ 2.26
CHFR-222	ENST00000544093	HIRA	P54198	1017 aa	Predicted RBP	29.18	■■■□□ 2.26
CHFR-222	ENST00000544093	TXNRD3	Q86VQ6	643 aa		29.18	■■■□□ 2.26
CHFR-222	ENST00000544093	MROH5	Q6ZUA9	1318 aa		29.18	■■■□□ 2.26
CHFR-222	ENST00000544093	UBTFL1	P0CB47	393 aa	Predicted RBP	29.17	■■■□□ 2.26
CHFR-222	ENST00000544093	SAMD7	Q7Z3H4	446 aa		29.17	■■■□□ 2.26
CHFR-222	ENST00000544093	HELB	Q8NG08	1087 aa	Predicted RBP	29.17	■■■□□ 2.26
CHFR-222	ENST00000544093	SHTN1	A0MZ66	631 aa		29.16	■■■□□ 2.26
CHFR-222	ENST00000544093	USP17L8	P0C7I0	530 aa		29.16	■■■□□ 2.26
CHFR-222	ENST00000544093	ZNF280A	P59817	542 aa	Predicted RBP	29.16	■■■□□ 2.26
CHFR-222	ENST00000544093	CDC37L1	Q7L3B6	337 aa		29.16	■■■□□ 2.26
CHFR-222	ENST00000544093	ZNF804A	Q7Z570	1209 aa		29.16	■■■□□ 2.26
CHFR-222	ENST00000544093	GML	Q99445	158 aa		29.16	■■■□□ 2.26
CHFR-222	ENST00000544093	UBE4A	Q14139	1066 aa		29.15	■■■□□ 2.26
CHFR-222	ENST00000544093	KIF4B	Q2VIQ3	1234 aa		29.15	■■■□□ 2.26
CHFR-222	ENST00000544093	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	29.15	■■■□□ 2.26
CHFR-222	ENST00000544093	DACT2	Q5SW24	774 aa		29.15	■■■□□ 2.26
CHFR-222	ENST00000544093	KLRK1	P26718	216 aa		29.14	■■■□□ 2.26
CHFR-222	ENST00000544093	INTS3	Q68E01	1043 aa	Known RBP	29.14	■■■□□ 2.26
CHFR-222	ENST00000544093	CD209	Q9NNX6	404 aa		29.14	■■■□□ 2.26
CHFR-222	ENST00000544093	RIPOR2	Q9Y4F9	1068 aa		29.14	■■■□□ 2.26
CHFR-222	ENST00000544093	IRS2	Q9Y4H2	1338 aa		29.14	■■■□□ 2.25
CHFR-222	ENST00000544093	ZNF646	O15015	1829 aa	Predicted RBP	29.13	■■■□□ 2.25
CHFR-222	ENST00000544093	TTLL5	Q6EMB2	1281 aa		29.13	■■■□□ 2.25
CHFR-222	ENST00000544093	OGFOD1	Q8N543	542 aa		29.13	■■■□□ 2.25
CHFR-222	ENST00000544093	CNTNAP1	P78357	1384 aa		29.13	■■■□□ 2.25
CHFR-222	ENST00000544093	PLIN1	O60240	522 aa		29.12	■■■□□ 2.25
CHFR-222	ENST00000544093	ATF7IP	Q6VMQ6	1270 aa		29.12	■■■□□ 2.25
CHFR-222	ENST00000544093	FBXW7	Q969H0	707 aa		29.12	■■■□□ 2.25
CHFR-222	ENST00000544093	RBM26	Q5T8P6	1007 aa	Known RBP	29.11	■■■□□ 2.25
CHFR-222	ENST00000544093	DCPS	Q96C86	337 aa	Known RBP	29.11	■■■□□ 2.25
CHFR-222	ENST00000544093	EGFR	P00533	1210 aa		29.1	■■■□□ 2.25
CHFR-222	ENST00000544093	IL1R1	P14778	569 aa		29.1	■■■□□ 2.25
CHFR-222	ENST00000544093	GLIS2	Q9BZE0	524 aa	Predicted RBP	29.1	■■■□□ 2.25
CHFR-222	ENST00000544093	PUS3	Q9BZE2	481 aa	Known RBP	29.1	■■■□□ 2.25
CHFR-222	ENST00000544093	MYOZ2	Q9NPC6	264 aa		29.1	■■■□□ 2.25
CHFR-222	ENST00000544093	SNAP23	O00161	211 aa		29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	TRAF5	O00463	557 aa		29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	BCAR3	O75815	825 aa		29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	GNAI3	P08754	354 aa		29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	FRAT1	Q92837	279 aa	Predicted RBP	29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	MKRN1	Q9UHC7	482 aa	Known RBP	29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	ABT1	Q9ULW3	272 aa	Known RBP	29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	PCNT	O95613	3336 aa		29.09	■■■□□ 2.25
CHFR-222	ENST00000544093	RASSF10	A6NK89	507 aa		29.08	■■■□□ 2.25
CHFR-222	ENST00000544093	TRIM27	P14373	513 aa		29.08	■■■□□ 2.25
CHFR-222	ENST00000544093	GTF2I	P78347	998 aa		29.08	■■■□□ 2.25
CHFR-222	ENST00000544093	METTL24	Q5JXM2	366 aa		29.08	■■■□□ 2.25
CHFR-222	ENST00000544093	FBXO3	Q9UK99	471 aa		29.08	■■■□□ 2.25
CHFR-222	ENST00000544093	POLR2A	P24928	1970 aa	Known RBP	29.07	■■■□□ 2.24
CHFR-222	ENST00000544093	ZKSCAN2	Q63HK3	967 aa		29.07	■■■□□ 2.24
CHFR-222	ENST00000544093	KRT26	Q7Z3Y9	468 aa		29.07	■■■□□ 2.24
CHFR-222	ENST00000544093	HDAC9	Q9UKV0	1011 aa		29.07	■■■□□ 2.24
CHFR-222	ENST00000544093	PDE8B	O95263	885 aa		29.06	■■■□□ 2.24
CHFR-222	ENST00000544093	FKBP1A	P62942	108 aa	Known RBP	29.06	■■■□□ 2.24
CHFR-222	ENST00000544093	DEFB115	Q30KQ5	88 aa		29.06	■■■□□ 2.24
CHFR-222	ENST00000544093	CST9	Q5W186	159 aa		29.06	■■■□□ 2.24
CHFR-222	ENST00000544093	PITPNM2	Q9BZ72	1349 aa		29.05	■■■□□ 2.24
CHFR-222	ENST00000544093	CELF2	O95319	508 aa	Known RBP	29.05	■■■□□ 2.24
CHFR-222	ENST00000544093	LRRC24	Q50LG9	513 aa		29.05	■■■□□ 2.24
CHFR-222	ENST00000544093	SULF1	Q8IWU6	871 aa		29.05	■■■□□ 2.24
CHFR-222	ENST00000544093	LRRFIP2	Q9Y608	721 aa	Known RBP	29.05	■■■□□ 2.24
CHFR-222	ENST00000544093	EYA2	O00167	538 aa		29.04	■■■□□ 2.24
CHFR-222	ENST00000544093	HIBADH	P31937	336 aa	Known RBP	29.04	■■■□□ 2.24
CHFR-222	ENST00000544093	RFX5	P48382	616 aa	Predicted RBP	29.04	■■■□□ 2.24
CHFR-222	ENST00000544093	SCARF1	Q14162	830 aa		29.04	■■■□□ 2.24
CHFR-222	ENST00000544093	USP48	Q86UV5	1035 aa		29.04	■■■□□ 2.24
CHFR-222	ENST00000544093	MEIS3	Q99687	375 aa		29.04	■■■□□ 2.24
CHFR-222	ENST00000544093	GGA3	Q9NZ52	723 aa		29.04	■■■□□ 2.24
CHFR-222	ENST00000544093	SASH1	O94885	1247 aa		29.03	■■■□□ 2.24
CHFR-222	ENST00000544093	PTPN12	Q05209	780 aa	Known RBP	29.03	■■■□□ 2.24
CHFR-222	ENST00000544093	FMR1	Q06787	632 aa	Known RBP eCLIP	29.03	■■■□□ 2.24
CHFR-222	ENST00000544093	VGLL2	Q8N8G2	317 aa		29.03	■■■□□ 2.24
CHFR-222	ENST00000544093	KLHDC4	Q8TBB5	520 aa		29.03	■■■□□ 2.24
CHFR-222	ENST00000544093	MXD3	Q9BW11	206 aa		29.03	■■■□□ 2.24
CHFR-222	ENST00000544093	TLL2	Q9Y6L7	1015 aa		29.03	■■■□□ 2.24
CHFR-222	ENST00000544093	CAVIN4	Q5BKX8	364 aa		29.02	■■■□□ 2.24
CHFR-222	ENST00000544093	VPS37D	Q86XT2	251 aa		29.02	■■■□□ 2.24
CHFR-222	ENST00000544093	CIAO1	O76071	339 aa		29.01	■■■□□ 2.23
CHFR-222	ENST00000544093	PUM3	Q15397	648 aa	Known RBP	29.01	■■■□□ 2.23
CHFR-222	ENST00000544093	KIAA0825	Q8IV33	1275 aa		29.01	■■■□□ 2.23
CHFR-222	ENST00000544093	HHIPL1	Q96JK4	782 aa		29.01	■■■□□ 2.23
CHFR-222	ENST00000544093	FAM84B	Q96KN1	310 aa	Predicted RBP	29.01	■■■□□ 2.23
CHFR-222	ENST00000544093	FAM205A	Q6ZU69	1335 aa		29	■■■□□ 2.23
CHFR-222	ENST00000544093	ECE1	P42892	770 aa		29	■■■□□ 2.23
CHFR-222	ENST00000544093	VEGFB	P49765	207 aa		29	■■■□□ 2.23
CHFR-222	ENST00000544093	ANGEL2	Q5VTE6	544 aa	Known RBP	29	■■■□□ 2.23
CHFR-222	ENST00000544093	TDRD7	Q8NHU6	1098 aa	Known RBP	29	■■■□□ 2.23
CHFR-222	ENST00000544093	ZNF408	Q9H9D4	720 aa		29	■■■□□ 2.23
CHFR-222	ENST00000544093	GYG1	P46976	350 aa		28.99	■■■□□ 2.23
CHFR-222	ENST00000544093	IFIT1	P09914	478 aa	Known RBP	28.98	■■■□□ 2.23
CHFR-222	ENST00000544093	SAPCD2	Q86UD0	394 aa		28.98	■■■□□ 2.23
CHFR-222	ENST00000544093	CLUAP1	Q96AJ1	413 aa		28.98	■■■□□ 2.23

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms