RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 LAMA4Q16363 1823 aa19.4■□□□□ 0.7
COL4A1-204ENST00000543140 SPEF2Q9C093 1822 aa19.4■□□□□ 0.7
COL4A1-204ENST00000543140 TTLL5Q6EMB2 1281 aa19.4■□□□□ 0.7
COL4A1-204ENST00000543140 FIBPO43427 364 aa19.4■□□□□ 0.7
COL4A1-204ENST00000543140 MCAMP43121 646 aa19.4■□□□□ 0.7
COL4A1-204ENST00000543140 NASPP49321 788 aaPredicted RBP19.4■□□□□ 0.7
COL4A1-204ENST00000543140 DNM1Q05193 864 aaKnown RBP19.39■□□□□ 0.69
COL4A1-204ENST00000543140 FAM98CQ17RN3 349 aaKnown RBP19.39■□□□□ 0.69
COL4A1-204ENST00000543140 VGLL2Q8N8G2 317 aa19.39■□□□□ 0.69
COL4A1-204ENST00000543140 BRF1Q92994 677 aa19.39■□□□□ 0.69
COL4A1-204ENST00000543140 FERMT3Q86UX7 667 aa19.39■□□□□ 0.69
COL4A1-204ENST00000543140 ATP6V1DQ9Y5K8 247 aa19.39■□□□□ 0.69
COL4A1-204ENST00000543140 PDE8BO95263 885 aa19.38■□□□□ 0.69
COL4A1-204ENST00000543140 TOM1O60784 492 aa19.38■□□□□ 0.69
COL4A1-204ENST00000543140 KCNQ4P56696 695 aa19.38■□□□□ 0.69
COL4A1-204ENST00000543140 CDC37L1Q7L3B6 337 aa19.38■□□□□ 0.69
COL4A1-204ENST00000543140 RBSNQ9H1K0 784 aa19.38■□□□□ 0.69
COL4A1-204ENST00000543140 E7EWF7 191 aa19.37■□□□□ 0.69
COL4A1-204ENST00000543140 CAMTA2O94983 1202 aa19.37■□□□□ 0.69
COL4A1-204ENST00000543140 BARGINQ6ZT62 677 aa19.37■□□□□ 0.69
COL4A1-204ENST00000543140 CHST3Q7LGC8 479 aa19.37■□□□□ 0.69
COL4A1-204ENST00000543140 TICAM2Q86XR7 235 aa19.37■□□□□ 0.69
COL4A1-204ENST00000543140 UTP14AQ9BVJ6 771 aaKnown RBP19.37■□□□□ 0.69
COL4A1-204ENST00000543140 PUS7LQ9H0K6 701 aaKnown RBP19.37■□□□□ 0.69
COL4A1-204ENST00000543140 AKAP11Q9UKA4 1901 aa19.37■□□□□ 0.69
COL4A1-204ENST00000543140 SNAP23O00161 211 aa19.36■□□□□ 0.69
COL4A1-204ENST00000543140 JAK2O60674 1132 aa19.36■□□□□ 0.69
COL4A1-204ENST00000543140 LRRFIP1Q32MZ4 808 aaKnown RBP19.36■□□□□ 0.69
COL4A1-204ENST00000543140 DHX32Q7L7V1 743 aaKnown RBP19.36■□□□□ 0.69
COL4A1-204ENST00000543140 SEC31BQ9NQW1 1179 aa19.36■□□□□ 0.69
COL4A1-204ENST00000543140 NIP7Q9Y221 180 aaKnown RBP eCLIP19.36■□□□□ 0.69
COL4A1-204ENST00000543140 PHKA1P46020 1223 aa19.36■□□□□ 0.69
COL4A1-204ENST00000543140 HAND2P61296 217 aa19.36■□□□□ 0.69
COL4A1-204ENST00000543140 GTF3C6Q969F1 213 aa19.36■□□□□ 0.69
COL4A1-204ENST00000543140 C8orf37Q96NL8 207 aa19.36■□□□□ 0.69
COL4A1-204ENST00000543140 MYO5AQ9Y4I1 1855 aaKnown RBP19.36■□□□□ 0.69
COL4A1-204ENST00000543140 ZFYP08048 801 aaPredicted RBP19.35■□□□□ 0.69
COL4A1-204ENST00000543140 FOXP2O15409 715 aa19.35■□□□□ 0.69
COL4A1-204ENST00000543140 FAM173BQ6P4H8 233 aa19.35■□□□□ 0.69
COL4A1-204ENST00000543140 TMEM87AQ8NBN3 555 aa19.35■□□□□ 0.69
COL4A1-204ENST00000543140 MYH7P12883 1935 aa19.35■□□□□ 0.69
COL4A1-204ENST00000543140 HMGB1P09429 215 aaKnown RBP19.34■□□□□ 0.69
COL4A1-204ENST00000543140 APOBRQ0VD83 1088 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 CCDC102BQ68D86 513 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 LRSAM1Q6UWE0 723 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 DDX11Q96FC9 970 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 NGLY1Q96IV0 654 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 PDCP20941 246 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 APPBP2Q92624 585 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 NAP1L2Q9ULW6 460 aaPredicted RBP19.34■□□□□ 0.69
COL4A1-204ENST00000543140 NWD2Q9ULI1 1742 aa19.34■□□□□ 0.69
COL4A1-204ENST00000543140 IDH1O75874 414 aaKnown RBP19.33■□□□□ 0.69
COL4A1-204ENST00000543140 MPHOSPH8Q99549 860 aa19.33■□□□□ 0.69
COL4A1-204ENST00000543140 PIH1D3Q9NQM4 214 aaKnown RBP19.33■□□□□ 0.69
COL4A1-204ENST00000543140 SCRN1Q12765 414 aa19.33■□□□□ 0.68
COL4A1-204ENST00000543140 PUM3Q15397 648 aaKnown RBP19.33■□□□□ 0.68
COL4A1-204ENST00000543140 SLC9C2Q5TAH2 1124 aa19.33■□□□□ 0.68
COL4A1-204ENST00000543140 FAM43AQ8N2R8 423 aa19.33■□□□□ 0.68
COL4A1-204ENST00000543140 GPAA1O43292 621 aa19.32■□□□□ 0.68
COL4A1-204ENST00000543140 FGAP02671 866 aa19.32■□□□□ 0.68
COL4A1-204ENST00000543140 EXOSC10Q01780 885 aaKnown RBP19.32■□□□□ 0.68
COL4A1-204ENST00000543140 SMIM5Q71RC9 77 aa19.32■□□□□ 0.68
COL4A1-204ENST00000543140 SYAP1Q96A49 352 aaPredicted RBP19.32■□□□□ 0.68
COL4A1-204ENST00000543140 PTF1AQ7RTS3 328 aa19.32■□□□□ 0.68
COL4A1-204ENST00000543140 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.32■□□□□ 0.68
COL4A1-204ENST00000543140 MROH5Q6ZUA9 1318 aa19.32■□□□□ 0.68
COL4A1-204ENST00000543140 UBE2HP62256 183 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 CCT2P78371 535 aaKnown RBP19.31■□□□□ 0.68
COL4A1-204ENST00000543140 LPIN2Q92539 896 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 SMARCC1Q92922 1105 aaPredicted RBP19.31■□□□□ 0.68
COL4A1-204ENST00000543140 AK7Q96M32 723 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 ABCC12Q96J65 1359 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 UBAP1LF5GYI3 381 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 PPFIA3O75145 1194 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 PARP10Q53GL7 1025 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 RRAGDQ9NQL2 400 aaPredicted RBP19.31■□□□□ 0.68
COL4A1-204ENST00000543140 CTNNA3Q9UI47 895 aa19.31■□□□□ 0.68
COL4A1-204ENST00000543140 NTSR2O95665 410 aa19.3■□□□□ 0.68
COL4A1-204ENST00000543140 IMMTQ16891 758 aaKnown RBP19.3■□□□□ 0.68
COL4A1-204ENST00000543140 FGFR2P21802 821 aa19.3■□□□□ 0.68
COL4A1-204ENST00000543140 LINC00116Q8NCU8 138 aa19.3■□□□□ 0.68
COL4A1-204ENST00000543140 RNF214Q8ND24 703 aa19.3■□□□□ 0.68
COL4A1-204ENST00000543140 ANP32BQ92688 251 aaKnown RBP19.3■□□□□ 0.68
COL4A1-204ENST00000543140 ZNF512BQ96KM6 892 aaPredicted RBP19.3■□□□□ 0.68
COL4A1-204ENST00000543140 NCOA5Q9HCD5 579 aaKnown RBP19.3■□□□□ 0.68
COL4A1-204ENST00000543140 GPHNQ9NQX3 736 aaPredicted RBP19.3■□□□□ 0.68
COL4A1-204ENST00000543140 PFKFB2O60825 505 aa19.29■□□□□ 0.68
COL4A1-204ENST00000543140 ADD2P35612 726 aa19.29■□□□□ 0.68
COL4A1-204ENST00000543140 FOSBP53539 338 aa19.29■□□□□ 0.68
COL4A1-204ENST00000543140 CCDC152Q4G0S7 254 aa19.29■□□□□ 0.68
COL4A1-204ENST00000543140 DDX60Q8IY21 1712 aaKnown RBP19.29■□□□□ 0.68
COL4A1-204ENST00000543140 TTF1Q15361 905 aaPredicted RBP19.29■□□□□ 0.68
COL4A1-204ENST00000543140 SLC5A1P13866 664 aa19.28■□□□□ 0.68
COL4A1-204ENST00000543140 ARID4AP29374 1257 aaPredicted RBP19.28■□□□□ 0.68
COL4A1-204ENST00000543140 TFIP11Q9UBB9 837 aaKnown RBP19.28■□□□□ 0.68
COL4A1-204ENST00000543140 WWC3Q9ULE0 1092 aa19.28■□□□□ 0.68
COL4A1-204ENST00000543140 RREB1Q92766 1687 aa19.28■□□□□ 0.68
COL4A1-204ENST00000543140 ZNF532Q9HCE3 1301 aa19.28■□□□□ 0.68
COL4A1-204ENST00000543140 UQCRFS1P1P0C7P4 283 aa19.28■□□□□ 0.68
COL4A1-204ENST00000543140 ZSCAN25Q6NSZ9 544 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms