RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 NEUROD2Q15784 382 aa6.37□□□□□ -1.39
LIMS1-214ENST00000542845 E2F4Q16254 413 aa6.37□□□□□ -1.39
LIMS1-214ENST00000542845 UTP14AQ9BVJ6 771 aaKnown RBP6.37□□□□□ -1.39
LIMS1-214ENST00000542845 EFCC1Q9HA90 598 aa6.37□□□□□ -1.39
LIMS1-214ENST00000542845 BMP2KQ9NSY1 1161 aaPredicted RBP6.37□□□□□ -1.39
LIMS1-214ENST00000542845 ALDH1A1P00352 501 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 NF2P35240 595 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 PTPN12Q05209 780 aaKnown RBP6.36□□□□□ -1.39
LIMS1-214ENST00000542845 GRAPQ13588 217 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 SLC9C1Q4G0N8 1177 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 NOM1Q5C9Z4 860 aaKnown RBP6.36□□□□□ -1.39
LIMS1-214ENST00000542845 NBPF11Q86T75 865 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 ZNF34Q8IZ26 560 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 EFCAB3Q8N7B9 438 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 GRAPLQ8TC17 118 aaPredicted RBP6.36□□□□□ -1.39
LIMS1-214ENST00000542845 ERO1AQ96HE7 468 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 PHACTR3Q96KR7 559 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 FZD1Q9UP38 647 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 TRPC6Q9Y210 931 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 LAMB2P55268 1798 aa6.36□□□□□ -1.39
LIMS1-214ENST00000542845 RTL9Q8NET4 1388 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 GPSM2P81274 684 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 GOLGA2Q08379 1002 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 GIGYF2Q6Y7W6 1299 aaKnown RBP6.35□□□□□ -1.39
LIMS1-214ENST00000542845 ARMC9Q7Z3E5 817 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 IFNL1Q8IU54 200 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 FBXW7Q969H0 707 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 SLC10A4Q96EP9 437 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 LRCH3Q96II8 777 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 EYA3Q99504 573 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 THUMPD2Q9BTF0 503 aaKnown RBP6.35□□□□□ -1.39
LIMS1-214ENST00000542845 ZC3H12CQ9C0D7 883 aaKnown RBP6.35□□□□□ -1.39
LIMS1-214ENST00000542845 MYOZ2Q9NPC6 264 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 POLLQ9UGP5 575 aa6.35□□□□□ -1.39
LIMS1-214ENST00000542845 ANGEL1Q9UNK9 670 aaKnown RBP6.35□□□□□ -1.39
LIMS1-214ENST00000542845 CEMIPQ8WUJ3 1361 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 SOX1O00570 391 aaPredicted RBP6.34□□□□□ -1.39
LIMS1-214ENST00000542845 ST18O60284 1047 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 VIL1P09327 827 aaKnown RBP6.34□□□□□ -1.39
LIMS1-214ENST00000542845 PRKAR2BP31323 418 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 SP3Q02447 781 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 NBPF9Q3BBW0 867 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 PARP10Q53GL7 1025 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 SLC10A5Q5PT55 438 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 CC2D1BQ5T0F9 858 aaKnown RBP6.34□□□□□ -1.39
LIMS1-214ENST00000542845 SPRYD7Q5W111 196 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 SPNS2Q8IVW8 549 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 SH3TC2Q8TF17 1288 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 ARMC5Q96C12 935 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 KIF12Q96FN5 646 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 COL25A1Q9BXS0 654 aaPredicted RBP6.34□□□□□ -1.39
LIMS1-214ENST00000542845 TRMT112Q9UI30 125 aaKnown RBP6.34□□□□□ -1.39
LIMS1-214ENST00000542845 PTCH2Q9Y6C5 1203 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 SZT2Q5T011 3432 aa6.34□□□□□ -1.39
LIMS1-214ENST00000542845 MKI67P46013 3256 aaKnown RBP6.34□□□□□ -1.39
LIMS1-214ENST00000542845 KIAA0100Q14667 2235 aaKnown RBP6.34□□□□□ -1.39
LIMS1-214ENST00000542845 ANKRD36CQ5JPF3 1778 aa6.34□□□□□ -1.4
LIMS1-214ENST00000542845 MANSC4A6NHS7 340 aaPredicted RBP6.33□□□□□ -1.4
LIMS1-214ENST00000542845 IGF2BP3O00425 579 aaKnown RBP eCLIP6.33□□□□□ -1.4
LIMS1-214ENST00000542845 SEMA3EO15041 775 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 PPP1R37O75864 691 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 USP17L8P0C7I0 530 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 INHBEP58166 350 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 AIMP1Q12904 312 aaKnown RBP6.33□□□□□ -1.4
LIMS1-214ENST00000542845 CRHR2Q13324 411 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 TAF7Q15545 349 aaPredicted RBP6.33□□□□□ -1.4
LIMS1-214ENST00000542845 RTL5Q5HYW3 569 aaPredicted RBP6.33□□□□□ -1.4
LIMS1-214ENST00000542845 OTUD7BQ6GQQ9 843 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 RSBN1LQ6PCB5 846 aaPredicted RBP6.33□□□□□ -1.4
LIMS1-214ENST00000542845 CELF1Q92879 486 aaKnown RBP6.33□□□□□ -1.4
LIMS1-214ENST00000542845 ZNF333Q96JL9 665 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 CFHR5Q9BXR6 569 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 ANKIB1Q9P2G1 1089 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 TRIOBPQ9H2D6 2365 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 SCN9AQ15858 1988 aa6.33□□□□□ -1.4
LIMS1-214ENST00000542845 IBTKQ9P2D0 1353 aaPredicted RBP6.32□□□□□ -1.4
LIMS1-214ENST00000542845 DUOX1Q9NRD9 1551 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 PITPNM2Q9BZ72 1349 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 ANXA1P04083 346 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 EIF2S2P20042 333 aaKnown RBP6.32□□□□□ -1.4
LIMS1-214ENST00000542845 CAP1Q01518 475 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 SMYD5Q6GMV2 418 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 Q7L0L9 218 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 DEFB123Q8N688 67 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 AGBL3Q8NEM8 1001 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 TBC1D16Q8TBP0 767 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 NECTIN2Q92692 538 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 CLMNQ96JQ2 1002 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 NR2E3Q9Y5X4 410 aa6.32□□□□□ -1.4
LIMS1-214ENST00000542845 DDX60Q8IY21 1712 aaKnown RBP6.32□□□□□ -1.4
LIMS1-214ENST00000542845 LAMB4A4D0S4 1761 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 UFL1O94874 794 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 SASH1O94885 1247 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 SEC24BO95487 1268 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 ZNF280AP59817 542 aaPredicted RBP6.31□□□□□ -1.4
LIMS1-214ENST00000542845 ARHGEF6Q15052 776 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 TMC4Q7Z404 712 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 NLRP10Q86W26 655 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 OGFOD1Q8N543 542 aa6.31□□□□□ -1.4
LIMS1-214ENST00000542845 LARP6Q9BRS8 491 aaKnown RBP6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms