RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 AAMPQ13685 434 aa7.83□□□□□ -1.16
PRKDC-210ENST00000541488 C8orf34Q49A92 452 aa7.83□□□□□ -1.16
PRKDC-210ENST00000541488 TTC39BQ5VTQ0 682 aaPredicted RBP7.83□□□□□ -1.16
PRKDC-210ENST00000541488 WFDC8Q8IUA0 241 aa7.83□□□□□ -1.16
PRKDC-210ENST00000541488 ZDHHC13Q8IUH4 622 aa7.83□□□□□ -1.16
PRKDC-210ENST00000541488 FRRS1LQ9P0K9 344 aa7.83□□□□□ -1.16
PRKDC-210ENST00000541488 TMEM63CQ9P1W3 806 aa7.83□□□□□ -1.16
PRKDC-210ENST00000541488 FNDC3AQ9Y2H6 1198 aaKnown RBP7.83□□□□□ -1.16
PRKDC-210ENST00000541488 DLL1O00548 723 aa7.82□□□□□ -1.16
PRKDC-210ENST00000541488 ZNF211Q13398 564 aaPredicted RBP7.82□□□□□ -1.16
PRKDC-210ENST00000541488 NOM1Q5C9Z4 860 aaKnown RBP7.82□□□□□ -1.16
PRKDC-210ENST00000541488 PHLDB3Q6NSJ2 640 aa7.82□□□□□ -1.16
PRKDC-210ENST00000541488 KANSL3Q9P2N6 904 aa7.82□□□□□ -1.16
PRKDC-210ENST00000541488 TRIM33Q9UPN9 1127 aa7.82□□□□□ -1.16
PRKDC-210ENST00000541488 WNT11O96014 354 aa7.81□□□□□ -1.16
PRKDC-210ENST00000541488 EIF1AXP47813 144 aaKnown RBP7.81□□□□□ -1.16
PRKDC-210ENST00000541488 ATP11AP98196 1134 aa7.81□□□□□ -1.16
PRKDC-210ENST00000541488 INTS5Q6P9B9 1019 aaKnown RBP7.81□□□□□ -1.16
PRKDC-210ENST00000541488 ZNF438Q7Z4V0 828 aa7.81□□□□□ -1.16
PRKDC-210ENST00000541488 DTX1Q86Y01 620 aa7.81□□□□□ -1.16
PRKDC-210ENST00000541488 RBSNQ9H1K0 784 aa7.81□□□□□ -1.16
PRKDC-210ENST00000541488 ABI2Q9NYB9 513 aaPredicted RBP7.81□□□□□ -1.16
PRKDC-210ENST00000541488 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.81□□□□□ -1.16
PRKDC-210ENST00000541488 F8W735 103 aaPredicted RBP7.8□□□□□ -1.16
PRKDC-210ENST00000541488 CDC25BP30305 580 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 SOX18P35713 384 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 GRIK1P39086 918 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 IL22RA1Q8N6P7 574 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 OR13H1Q8NG92 308 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 LACRTQ9GZZ8 138 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 GGNBP2Q9H3C7 697 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 ELP3Q9H9T3 547 aa7.8□□□□□ -1.16
PRKDC-210ENST00000541488 PDGFAP04085 211 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 HYAL2Q12891 473 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 CEP135Q66GS9 1140 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 POU5F2Q8N7G0 328 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 TTC16Q8NEE8 873 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 SPACA7Q96KW9 195 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 CNTN3Q9P232 1028 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 STOML1Q9UBI4 398 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 POLIQ9UNA4 740 aa7.79□□□□□ -1.16
PRKDC-210ENST00000541488 TXNDC11Q6PKC3 985 aa7.78□□□□□ -1.16
PRKDC-210ENST00000541488 Q6ZS46 218 aa7.78□□□□□ -1.16
PRKDC-210ENST00000541488 NCAPG2Q86XI2 1143 aa7.78□□□□□ -1.16
PRKDC-210ENST00000541488 TMEM130Q8N3G9 435 aa7.78□□□□□ -1.16
PRKDC-210ENST00000541488 MRPL18Q9H0U6 180 aaKnown RBP7.78□□□□□ -1.16
PRKDC-210ENST00000541488 RASSF4Q9H2L5 321 aa7.78□□□□□ -1.16
PRKDC-210ENST00000541488 ACPPP15309 386 aa7.77□□□□□ -1.17
PRKDC-210ENST00000541488 PCSK2P16519 638 aa7.77□□□□□ -1.17
PRKDC-210ENST00000541488 C1orf127Q8N9H9 656 aa7.77□□□□□ -1.17
PRKDC-210ENST00000541488 TTC9Q92623 222 aa7.77□□□□□ -1.17
PRKDC-210ENST00000541488 TRPA1O75762 1119 aa7.76□□□□□ -1.17
PRKDC-210ENST00000541488 SERPINB4P48594 390 aa7.76□□□□□ -1.17
PRKDC-210ENST00000541488 ADAMTSL4Q6UY14 1074 aa7.76□□□□□ -1.17
PRKDC-210ENST00000541488 RETREG2Q8NC44 543 aa7.76□□□□□ -1.17
PRKDC-210ENST00000541488 MTMR7Q9Y216 660 aa7.76□□□□□ -1.17
PRKDC-210ENST00000541488 LINC01387J3KSC0 135 aa7.75□□□□□ -1.17
PRKDC-210ENST00000541488 GLB1P16278 677 aa7.75□□□□□ -1.17
PRKDC-210ENST00000541488 MZF1P28698 734 aaPredicted RBP7.75□□□□□ -1.17
PRKDC-210ENST00000541488 PDE12Q6L8Q7 609 aaKnown RBP7.75□□□□□ -1.17
PRKDC-210ENST00000541488 ABI1Q8IZP0 508 aa7.75□□□□□ -1.17
PRKDC-210ENST00000541488 AGGF1Q8N302 714 aaeCLIP7.75□□□□□ -1.17
PRKDC-210ENST00000541488 CCDC87Q9NVE4 849 aa7.75□□□□□ -1.17
PRKDC-210ENST00000541488 PRR19A6NJB7 356 aa7.74□□□□□ -1.17
PRKDC-210ENST00000541488 HOXD8P13378 290 aaPredicted RBP7.74□□□□□ -1.17
PRKDC-210ENST00000541488 CES1P23141 567 aa7.74□□□□□ -1.17
PRKDC-210ENST00000541488 NFIAQ12857 509 aa7.74□□□□□ -1.17
PRKDC-210ENST00000541488 CCER1Q8TC90 406 aaPredicted RBP7.74□□□□□ -1.17
PRKDC-210ENST00000541488 USTQ9Y2C2 406 aa7.74□□□□□ -1.17
PRKDC-210ENST00000541488 H3BRB1 525 aa7.73□□□□□ -1.17
PRKDC-210ENST00000541488 SMNDC1O75940 238 aaKnown RBP eCLIP7.73□□□□□ -1.176e-8■■■□□ 19.1
PRKDC-210ENST00000541488 FAM13AO94988 1023 aa7.73□□□□□ -1.17
PRKDC-210ENST00000541488 FKBP4Q02790 459 aaKnown RBP eCLIP7.73□□□□□ -1.17
PRKDC-210ENST00000541488 ALKBH2Q6NS38 261 aa7.73□□□□□ -1.17
PRKDC-210ENST00000541488 UBL7Q96S82 380 aaPredicted RBP7.73□□□□□ -1.17
PRKDC-210ENST00000541488 CARD10Q9BWT7 1032 aa7.73□□□□□ -1.17
PRKDC-210ENST00000541488 TUT1Q9H6E5 874 aaKnown RBP7.73□□□□□ -1.17
PRKDC-210ENST00000541488 SH2B1Q9NRF2 756 aaPredicted RBP7.73□□□□□ -1.17
PRKDC-210ENST00000541488 FOXD3Q9UJU5 478 aaPredicted RBP7.73□□□□□ -1.17
PRKDC-210ENST00000541488 DHX15O43143 795 aaKnown RBP7.72□□□□□ -1.17
PRKDC-210ENST00000541488 FZD6O60353 706 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 KIF4AO95239 1232 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 FBLN7Q53RD9 439 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 ERICH6Q7L0X2 663 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 CEP120Q8N960 986 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 HHIPQ96QV1 700 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 CHRDQ9H2X0 955 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 PPME1Q9Y570 386 aa7.72□□□□□ -1.17
PRKDC-210ENST00000541488 KRTAP9-7A8MTY7 169 aa7.71□□□□□ -1.18
PRKDC-210ENST00000541488 EREGO14944 169 aa7.71□□□□□ -1.18
PRKDC-210ENST00000541488 RPLP1P05386 114 aaKnown RBP7.71□□□□□ -1.18
PRKDC-210ENST00000541488 SF3B2Q13435 895 aaKnown RBP7.71□□□□□ -1.18
PRKDC-210ENST00000541488 SETDB1Q15047 1291 aa7.71□□□□□ -1.18
PRKDC-210ENST00000541488 POP1Q99575 1024 aaKnown RBP7.71□□□□□ -1.18
PRKDC-210ENST00000541488 PBX4Q9BYU1 374 aa7.71□□□□□ -1.18
PRKDC-210ENST00000541488 PHACTR2O75167 634 aa7.7□□□□□ -1.18
PRKDC-210ENST00000541488 CDC27P30260 824 aa7.7□□□□□ -1.18
PRKDC-210ENST00000541488 GLYCTKQ8IVS8 523 aa7.7□□□□□ -1.18
PRKDC-210ENST00000541488 ARMC10Q8N2F6 343 aa7.7□□□□□ -1.18
PRKDC-210ENST00000541488 C7orf69Q9H7B7 122 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms