RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLIP1-216ENST00000541410 PUS7LQ9H0K6 701 aaKnown RBP17.35■□□□□ 0.37
CLIP1-216ENST00000541410 CICQ96RK0 1608 aaPredicted RBP17.34■□□□□ 0.37
CLIP1-216ENST00000541410 BCORQ6W2J9 1755 aa17.34■□□□□ 0.37
CLIP1-216ENST00000541410 RPS6KB1P23443 525 aa17.34■□□□□ 0.37
CLIP1-216ENST00000541410 PUM3Q15397 648 aaKnown RBP17.34■□□□□ 0.37
CLIP1-216ENST00000541410 U3KPZ7 1027 aaPredicted RBP17.34■□□□□ 0.37
CLIP1-216ENST00000541410 GOLGA6L22H0YM25 854 aa17.33■□□□□ 0.37
CLIP1-216ENST00000541410 IDH1O75874 414 aaKnown RBP17.33■□□□□ 0.37
CLIP1-216ENST00000541410 PIH1D3Q9NQM4 214 aaKnown RBP17.33■□□□□ 0.37
CLIP1-216ENST00000541410 HMG20BQ9P0W2 317 aa17.33■□□□□ 0.37
CLIP1-216ENST00000541410 CNTNAP4Q9C0A0 1308 aa17.33■□□□□ 0.37
CLIP1-216ENST00000541410 MYH7P12883 1935 aa17.33■□□□□ 0.36
CLIP1-216ENST00000541410 BRD1O95696 1058 aa17.33■□□□□ 0.36
CLIP1-216ENST00000541410 IGHMBP2P38935 993 aaKnown RBP17.33■□□□□ 0.36
CLIP1-216ENST00000541410 TOB2Q14106 344 aaPredicted RBP17.33■□□□□ 0.36
CLIP1-216ENST00000541410 CLEC17AQ6ZS10 378 aa17.33■□□□□ 0.36
CLIP1-216ENST00000541410 NEK1Q96PY6 1258 aa17.33■□□□□ 0.36
CLIP1-216ENST00000541410 MROH5Q6ZUA9 1318 aa17.33■□□□□ 0.36
CLIP1-216ENST00000541410 PRPF40AO75400 957 aaKnown RBP17.32■□□□□ 0.36
CLIP1-216ENST00000541410 HAND2P61296 217 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 CLEC4GQ6UXB4 293 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 AK7Q96M32 723 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 IQSEC3Q9UPP2 1182 aaPredicted RBP17.32■□□□□ 0.36
CLIP1-216ENST00000541410 SMC3Q9UQE7 1217 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 LAMA4Q16363 1823 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 NCLP19338 710 aaKnown RBP17.32■□□□□ 0.36
CLIP1-216ENST00000541410 FGFR2P21802 821 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 CHST3Q7LGC8 479 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 LPIN2Q92539 896 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 SBF2Q86WG5 1849 aa17.32■□□□□ 0.36
CLIP1-216ENST00000541410 ZPR1O75312 459 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 RPS6KA4O75676 772 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 BCAMP50895 628 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 CHRNDQ07001 517 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 SLC9C2Q5TAH2 1124 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 DDX49Q9Y6V7 483 aaKnown RBP17.31■□□□□ 0.36
CLIP1-216ENST00000541410 CASZ1Q86V15 1759 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 NHSQ6T4R5 1651 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 ABCC12Q96J65 1359 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 FOXP2O15409 715 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 GJB2P29033 226 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 TSGA10IPQ3SY00 556 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 TPRNQ4KMQ1 711 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 ARHGEF1Q92888 912 aaKnown RBP17.31■□□□□ 0.36
CLIP1-216ENST00000541410 QTRT2Q9H974 415 aaKnown RBP17.31■□□□□ 0.36
CLIP1-216ENST00000541410 GDPD2Q9HCC8 539 aa17.31■□□□□ 0.36
CLIP1-216ENST00000541410 RTCBQ9Y3I0 505 aaKnown RBP17.31■□□□□ 0.36
CLIP1-216ENST00000541410 SLC5A1P13866 664 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 Q6ZUG5 572 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 DSCC1Q9BVC3 393 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 LMBRD1Q9NUN5 540 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 NARFQ9UHQ1 456 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 TRPC5Q9UL62 973 aaPredicted RBP17.3■□□□□ 0.36
CLIP1-216ENST00000541410 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.3■□□□□ 0.36
CLIP1-216ENST00000541410 RASGRF1Q13972 1273 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 WWC3Q9ULE0 1092 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 LRP5O75197 1615 aa17.3■□□□□ 0.36
CLIP1-216ENST00000541410 SYT1P21579 422 aa17.29■□□□□ 0.36
CLIP1-216ENST00000541410 NBPF5PQ86XG9 351 aaPredicted RBP17.29■□□□□ 0.36
CLIP1-216ENST00000541410 SETDB2Q96T68 719 aa17.29■□□□□ 0.36
CLIP1-216ENST00000541410 LRRC4BQ9NT99 713 aa17.29■□□□□ 0.36
CLIP1-216ENST00000541410 KRT32Q14532 448 aa17.29■□□□□ 0.36
CLIP1-216ENST00000541410 APPBP2Q92624 585 aa17.29■□□□□ 0.36
CLIP1-216ENST00000541410 CELF1Q92879 486 aaKnown RBP17.29■□□□□ 0.36
CLIP1-216ENST00000541410 ZSCAN31Q96LW9 406 aaPredicted RBP17.29■□□□□ 0.36
CLIP1-216ENST00000541410 ZNF831Q5JPB2 1677 aa17.29■□□□□ 0.36
CLIP1-216ENST00000541410 TAF1LQ8IZX4 1826 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 GPAA1O43292 621 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 HSP90B1P14625 803 aaKnown RBP17.28■□□□□ 0.36
CLIP1-216ENST00000541410 ARID4AP29374 1257 aaPredicted RBP17.28■□□□□ 0.36
CLIP1-216ENST00000541410 FGD1P98174 961 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 FAM196AQ6ZSG2 479 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 SH2B1Q9NRF2 756 aaPredicted RBP17.28■□□□□ 0.36
CLIP1-216ENST00000541410 LAMB2P55268 1798 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 E7EWF7 191 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 RC3H1Q5TC82 1133 aaKnown RBP17.28■□□□□ 0.36
CLIP1-216ENST00000541410 SPATA5Q8NB90 893 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 BRF1Q92994 677 aa17.28■□□□□ 0.36
CLIP1-216ENST00000541410 NPHP1O15259 732 aa17.27■□□□□ 0.36
CLIP1-216ENST00000541410 FGAP02671 866 aa17.27■□□□□ 0.36
CLIP1-216ENST00000541410 ZFYP08048 801 aaPredicted RBP17.27■□□□□ 0.36
CLIP1-216ENST00000541410 ADD2P35612 726 aa17.27■□□□□ 0.36
CLIP1-216ENST00000541410 SLC51AQ86UW1 340 aa17.27■□□□□ 0.36
CLIP1-216ENST00000541410 ANKRD18AQ8IVF6 992 aa17.27■□□□□ 0.36
CLIP1-216ENST00000541410 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.27■□□□□ 0.364e-6■■□□□ 12.7
CLIP1-216ENST00000541410 ZNF532Q9HCE3 1301 aa17.27■□□□□ 0.36
CLIP1-216ENST00000541410 STX6O43752 255 aa17.26■□□□□ 0.35
CLIP1-216ENST00000541410 PPFIA3O75145 1194 aa17.26■□□□□ 0.35
CLIP1-216ENST00000541410 LRRFIP1Q32MZ4 808 aaKnown RBP17.26■□□□□ 0.35
CLIP1-216ENST00000541410 CDC5LQ99459 802 aaKnown RBP17.26■□□□□ 0.35
CLIP1-216ENST00000541410 NSFL1CQ9UNZ2 370 aaKnown RBP17.26■□□□□ 0.35
CLIP1-216ENST00000541410 SCN7AQ01118 1682 aa17.26■□□□□ 0.35
CLIP1-216ENST00000541410 RFC4P35249 363 aa17.26■□□□□ 0.35
CLIP1-216ENST00000541410 GYG1P46976 350 aa17.26■□□□□ 0.35
CLIP1-216ENST00000541410 NAP1L2Q9ULW6 460 aaPredicted RBP17.26■□□□□ 0.35
CLIP1-216ENST00000541410 WDR33Q9C0J8 1336 aaKnown RBP17.26■□□□□ 0.35
CLIP1-216ENST00000541410 ATRNO75882 1429 aa17.26■□□□□ 0.35
CLIP1-216ENST00000541410 VPS37CA5D8V6 355 aaPredicted RBP17.25■□□□□ 0.35
CLIP1-216ENST00000541410 UQCRFS1P1P0C7P4 283 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms