RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 SALL1Q9NSC2 1324 aa20.48■□□□□ 0.87
RAB40C-205ENST00000539661 TPM1P09493 284 aa20.48■□□□□ 0.87
RAB40C-205ENST00000539661 SDF4Q9BRK5 362 aa20.48■□□□□ 0.87
RAB40C-205ENST00000539661 FTOQ9C0B1 505 aaKnown RBP eCLIP20.48■□□□□ 0.87
RAB40C-205ENST00000539661 XPO4Q9C0E2 1151 aaKnown RBP20.48■□□□□ 0.87
RAB40C-205ENST00000539661 RTEL1Q9NZ71 1219 aa20.48■□□□□ 0.87
RAB40C-205ENST00000539661 ZRANB2O95218 330 aaKnown RBP eCLIP20.47■□□□□ 0.872e-6■■■□□ 16.1
RAB40C-205ENST00000539661 CTDNEP1O95476 244 aa20.47■□□□□ 0.87
RAB40C-205ENST00000539661 MCMDC2Q4G0Z9 681 aa20.47■□□□□ 0.87
RAB40C-205ENST00000539661 TMC6Q7Z403 805 aa20.47■□□□□ 0.87
RAB40C-205ENST00000539661 ST7Q9NRC1 585 aa20.47■□□□□ 0.87
RAB40C-205ENST00000539661 ETF1P62495 437 aaKnown RBP20.47■□□□□ 0.87
RAB40C-205ENST00000539661 ARHGAP29Q52LW3 1261 aa20.47■□□□□ 0.87
RAB40C-205ENST00000539661 LAMA4Q16363 1823 aa20.47■□□□□ 0.87
RAB40C-205ENST00000539661 ZNF609O15014 1411 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 ERICH4A6NGS2 130 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 CDK11BP21127 795 aaKnown RBP20.46■□□□□ 0.87
RAB40C-205ENST00000539661 TSPYL1Q9H0U9 437 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 IFNKQ9P0W0 207 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 LTN1O94822 1766 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 SMC2O95347 1197 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 ESCO1Q5FWF5 840 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 TEX35Q5T0J7 233 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 LMOD2Q6P5Q4 547 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 TMCO3Q6UWJ1 677 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 ORAI2Q96SN7 254 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 PCDHA7Q9UN72 937 aa20.46■□□□□ 0.87
RAB40C-205ENST00000539661 PROSER3Q2NL68 480 aa20.45■□□□□ 0.86
RAB40C-205ENST00000539661 IP6K1Q92551 441 aa20.45■□□□□ 0.86
RAB40C-205ENST00000539661 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.45■□□□□ 0.86
RAB40C-205ENST00000539661 NPHP1O15259 732 aa20.45■□□□□ 0.86
RAB40C-205ENST00000539661 PLA2G4AP47712 749 aa20.45■□□□□ 0.86
RAB40C-205ENST00000539661 TICAM2Q86XR7 235 aa20.45■□□□□ 0.86
RAB40C-205ENST00000539661 UBXN4Q92575 508 aa20.45■□□□□ 0.86
RAB40C-205ENST00000539661 DNAJC2Q99543 621 aaKnown RBP20.45■□□□□ 0.86
RAB40C-205ENST00000539661 SIL1Q9H173 461 aa20.45■□□□□ 0.86
RAB40C-205ENST00000539661 ORC3Q9UBD5 711 aaPredicted RBP20.45■□□□□ 0.86
RAB40C-205ENST00000539661 A0A087WWV3 80 aa20.44■□□□□ 0.86
RAB40C-205ENST00000539661 ILDR1Q86SU0 546 aaPredicted RBP20.44■□□□□ 0.86
RAB40C-205ENST00000539661 NLRP12P59046 1061 aa20.44■□□□□ 0.86
RAB40C-205ENST00000539661 EXOSC10Q01780 885 aaKnown RBP20.44■□□□□ 0.86
RAB40C-205ENST00000539661 ZNF274Q96GC6 653 aaPredicted RBP20.44■□□□□ 0.86
RAB40C-205ENST00000539661 COPRSQ9NQ92 184 aa20.44■□□□□ 0.86
RAB40C-205ENST00000539661 SH3TC1Q8TE82 1336 aa20.44■□□□□ 0.86
RAB40C-205ENST00000539661 DPCR1Q3MIW9 517 aa20.43■□□□□ 0.86
RAB40C-205ENST00000539661 PLEKHO1Q53GL0 409 aaPredicted RBP20.43■□□□□ 0.86
RAB40C-205ENST00000539661 KCNG4Q8TDN1 519 aa20.43■□□□□ 0.86
RAB40C-205ENST00000539661 DDX17Q92841 729 aaKnown RBP20.43■□□□□ 0.86
RAB40C-205ENST00000539661 IKBKBO14920 756 aa20.43■□□□□ 0.86
RAB40C-205ENST00000539661 ZNF530Q6P9A1 599 aaPredicted RBP20.43■□□□□ 0.86
RAB40C-205ENST00000539661 STOX1Q6ZVD7 989 aa20.43■□□□□ 0.86
RAB40C-205ENST00000539661 HOMER1Q86YM7 354 aa20.43■□□□□ 0.86
RAB40C-205ENST00000539661 EDC3Q96F86 508 aaKnown RBP20.43■□□□□ 0.86
RAB40C-205ENST00000539661 EFCAB8A8MWE9 144 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 AMOTQ4VCS5 1084 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 NBPF6Q5VWK0 638 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 FCHSD1Q86WN1 690 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 LRRN4CLQ8ND94 238 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 NBPF4Q96M43 638 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 DDX21Q9NR30 783 aaKnown RBP eCLIP20.42■□□□□ 0.86
RAB40C-205ENST00000539661 DBNLQ9UJU6 430 aaKnown RBP20.42■□□□□ 0.86
RAB40C-205ENST00000539661 RNMTO43148 476 aaKnown RBP20.42■□□□□ 0.86
RAB40C-205ENST00000539661 YEATS4O95619 227 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 TNNI3KQ59H18 835 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 ANKLE2Q86XL3 938 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 HAUS7Q99871 368 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 LRRC2Q9BYS8 371 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 FPGT-TNNI3KV9GXZ4 949 aa20.42■□□□□ 0.86
RAB40C-205ENST00000539661 NDUFA8P51970 172 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 PSME1Q06323 249 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 APOBRQ0VD83 1088 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 LINC00301Q8NCQ3 95 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 DSCC1Q9BVC3 393 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 CARMIL3Q8ND23 1372 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.41■□□□□ 0.86
RAB40C-205ENST00000539661 NCAPHQ15003 741 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 CCDC158Q5M9N0 1113 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 MNS1Q8NEH6 495 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 UBXN6Q9BZV1 441 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 DNAI1Q9UI46 699 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 NEDD4P46934 1319 aa20.41■□□□□ 0.86
RAB40C-205ENST00000539661 A0A1B0GVL5 298 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 TADA3O75528 432 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 SLC3A2P08195 630 aaKnown RBP20.4■□□□□ 0.86
RAB40C-205ENST00000539661 LRRFIP1Q32MZ4 808 aaKnown RBP20.4■□□□□ 0.86
RAB40C-205ENST00000539661 CCDC129Q6ZRS4 1044 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 TXLNBQ8N3L3 684 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 ERCC4Q92889 916 aaPredicted RBP20.4■□□□□ 0.86
RAB40C-205ENST00000539661 POLR3EQ9NVU0 708 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 ZBTB22O15209 634 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 IGKV5-2P06315 115 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 FOSBP53539 338 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 FBXL16Q8N461 479 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 CBFA2T2O43439 604 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 HNRNPH2P55795 449 aaKnown RBP20.4■□□□□ 0.86
RAB40C-205ENST00000539661 STK38Q15208 465 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 TRIM65Q6PJ69 517 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 MPRIPQ6WCQ1 1025 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 TMX1Q9H3N1 280 aa20.4■□□□□ 0.86
RAB40C-205ENST00000539661 HELLSQ9NRZ9 838 aa20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms