RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SLFN14P0C7P3 912 aa13.11□□□□□ -0.31
SYNE1-237ENST00000539504 TERF2Q15554 542 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 TAF3Q5VWG9 929 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 ST7Q9NRC1 585 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 COL15A1P39059 1388 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 LRRC37A3O60309 1634 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 DPCR1Q3MIW9 517 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 CCDC66A2RUB6 948 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 CTDNEP1O95476 244 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 SLC3A2P08195 630 aaKnown RBP13.1□□□□□ -0.31
SYNE1-237ENST00000539504 LMOD1P29536 600 aaPredicted RBP13.1□□□□□ -0.31
SYNE1-237ENST00000539504 SYNE3Q6ZMZ3 975 aa13.1□□□□□ -0.31
SYNE1-237ENST00000539504 NDUFA8P51970 172 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 NWD1Q149M9 1564 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 A0A087WZG4 1122 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 ZNF609O15014 1411 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 ANKRD13DQ6ZTN6 518 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 KCNH5Q8NCM2 988 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 MNS1Q8NEH6 495 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 ENGASEQ8NFI3 743 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 CPLX1O14810 134 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 PTPN12Q05209 780 aaKnown RBP13.09□□□□□ -0.31
SYNE1-237ENST00000539504 FAM177A1Q8N128 213 aaPredicted RBP13.09□□□□□ -0.31
SYNE1-237ENST00000539504 CCDC150Q8NCX0 1101 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 ANKRD24Q8TF21 1146 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 C8orf76Q96K31 380 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 DNAI1Q9UI46 699 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 TOPAZ1Q8N9V7 1692 aa13.09□□□□□ -0.31
SYNE1-237ENST00000539504 A0A0G2JLW4 131 aa13.08□□□□□ -0.31
SYNE1-237ENST00000539504 HAND2P61296 217 aa13.08□□□□□ -0.31
SYNE1-237ENST00000539504 ARHGAP29Q52LW3 1261 aa13.08□□□□□ -0.31
SYNE1-237ENST00000539504 KBTBD3Q8NAB2 608 aa13.08□□□□□ -0.31
SYNE1-237ENST00000539504 PPP1R13BQ96KQ4 1090 aa13.08□□□□□ -0.31
SYNE1-237ENST00000539504 COPRSQ9NQ92 184 aa13.08□□□□□ -0.31
SYNE1-237ENST00000539504 KIAA1468Q9P260 1216 aa13.08□□□□□ -0.31
SYNE1-237ENST00000539504 BMS1Q14692 1282 aaKnown RBP13.08□□□□□ -0.32
SYNE1-237ENST00000539504 HAUS7Q99871 368 aa13.08□□□□□ -0.32
SYNE1-237ENST00000539504 METTL22Q9BUU2 404 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-237ENST00000539504 E7EWF7 191 aa13.08□□□□□ -0.32
SYNE1-237ENST00000539504 PDIA3P30101 505 aaKnown RBP13.08□□□□□ -0.32
SYNE1-237ENST00000539504 E4F1Q66K89 784 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-237ENST00000539504 ATL3Q6DD88 541 aa13.08□□□□□ -0.32
SYNE1-237ENST00000539504 UBXN4Q92575 508 aa13.08□□□□□ -0.32
SYNE1-237ENST00000539504 UTYO14607 1347 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 DIP2AQ14689 1571 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 CDK11BP21127 795 aaKnown RBP13.07□□□□□ -0.32
SYNE1-237ENST00000539504 TIMM10P62072 90 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 LMBR1LQ6UX01 489 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 FMR1NBQ8N0W7 255 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-237ENST00000539504 IMPACTQ9P2X3 320 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 CLIC4Q9Y696 253 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 PIK3C2AO00443 1686 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 URI1O94763 535 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-237ENST00000539504 SERPINC1P01008 464 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 ADALQ6DHV7 355 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 TTLL5Q6EMB2 1281 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 THEMISQ8N1K5 641 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-237ENST00000539504 NOL10Q9BSC4 688 aaKnown RBP13.07□□□□□ -0.32
SYNE1-237ENST00000539504 GPHNQ9NQX3 736 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-237ENST00000539504 PAG1Q9NWQ8 432 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 SPTLC2O15270 562 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 GNL2Q13823 731 aaKnown RBP13.07□□□□□ -0.32
SYNE1-237ENST00000539504 WASHC4Q2M389 1173 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 ARMCX5Q6P1M9 558 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 NBPF11Q86T75 865 aa13.07□□□□□ -0.32
SYNE1-237ENST00000539504 PDIA6Q15084 440 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 ZNF790Q6PG37 636 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 TTC5Q8N0Z6 440 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 OSBPL5Q9H0X9 879 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-237ENST00000539504 ORC3Q9UBD5 711 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-237ENST00000539504 MARCKSP29966 332 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-237ENST00000539504 CFAP100Q494V2 611 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 LRRN4CLQ8ND94 238 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 CHMP4CQ96CF2 233 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 ARGLU1Q9NWB6 273 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-237ENST00000539504 FKBP4Q02790 459 aaKnown RBP eCLIP13.06□□□□□ -0.32
SYNE1-237ENST00000539504 NFATC2IPQ8NCF5 419 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 KCNG4Q8TDN1 519 aa13.06□□□□□ -0.32
SYNE1-237ENST00000539504 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.06□□□□□ -0.32
SYNE1-237ENST00000539504 POLR3GO15318 223 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-237ENST00000539504 RAPGEF4Q8WZA2 1011 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 GJB4Q9NTQ9 266 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 CARMIL3Q8ND23 1372 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 GOLGA8BA8MQT2 603 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 ZNF202O95125 648 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 GCP02774 474 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 IFIT1P09914 478 aaKnown RBP13.05□□□□□ -0.32
SYNE1-237ENST00000539504 HSPD1P10809 573 aaKnown RBP13.05□□□□□ -0.32
SYNE1-237ENST00000539504 FANCCQ00597 558 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 PTPN21Q16825 1174 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 TMCO3Q6UWJ1 677 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 LINC00301Q8NCQ3 95 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 TRERF1Q96PN7 1200 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 RTEL1Q9NZ71 1219 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 ILDR1Q86SU0 546 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-237ENST00000539504 TMX1Q9H3N1 280 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 NLRP2Q9NX02 1062 aa13.05□□□□□ -0.32
SYNE1-237ENST00000539504 KLF18A0A0U1RQI7 1052 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 ZBTB22O15209 634 aa13.04□□□□□ -0.32
SYNE1-237ENST00000539504 CLCN6P51797 869 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms